View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_low_48 (Length: 252)
Name: NF11582_low_48
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 39230158 - 39229925
Alignment:
| Q |
1 |
tcaaatcagagtttatcatgatgctattttgtactagtgtatttcaaaaaatatcaatgcaatgaggtctaattggatgatcgtgcaaataatttttaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39230158 |
tcaaatcagagtttatcatgatgctattttgtactagtgtatttcaaaaaatatcaatgcaatgaggtctgattggatgatcgtgcaaataatttttaat |
39230059 |
T |
|
| Q |
101 |
attagtgtatctaaactctatcaatcttacatatgcaatactttgcttagatatcatcatcctttaattggataagtataaaactaccgatgctcaataa |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39230058 |
attagtgtatctaaactctattaatcttacatatgcaatactttgcttagatatcatcatcctttaattggataagtataaaactaccgatgctcaataa |
39229959 |
T |
|
| Q |
201 |
tttaagcttgtttaaagatgattaatgacatagt |
234 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| |
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| T |
39229958 |
tttaagcttgttgaaagatgattaatgacatagt |
39229925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 25549493 - 25549260
Alignment:
| Q |
1 |
tcaaatcagagtttatcatgatgctattttgtactagtgtatttcaaaaaatatcaatgcaatgaggtctaattggatgatcgtgcaaataatttttaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25549493 |
tcaaatcagagtttatcatgatgctattttgtactagtgtatttcaaaaaatatcaatgcaatgaggtctgattggatgatcgtgcaaataatttttaat |
25549394 |
T |
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| Q |
101 |
attagtgtatctaaactctatcaatcttacatatgcaatactttgcttagatatcatcatcctttaattggataagtataaaactaccgatgctcaataa |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25549393 |
attagtgtatctaaactctattaatcttacatatgcaatactttgcttagatatcatcatcctttaattggataagtataaaactactgatgctcaataa |
25549294 |
T |
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| Q |
201 |
tttaagcttgtttaaagatgattaatgacatagt |
234 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
25549293 |
tttaagcttgttgaaagatgattaatgacatagt |
25549260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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