View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_low_49 (Length: 251)
Name: NF11582_low_49
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_low_49 |
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| [»] chr5 (3 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 33 - 251
Target Start/End: Complemental strand, 39954268 - 39954050
Alignment:
| Q |
33 |
caaccgagcagaccagctataaaatctcattaaccttccattaaagttttgatgattataacaaaatagatagaatacttgcaatgcttttctgtaaatt |
132 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39954268 |
caacggagcagaccagctataaaatctcattaaccttccattcaagttttgatgattataacaaaatagatagaatacttgcaatgcttttctgtaaatt |
39954169 |
T |
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| Q |
133 |
ttccactataatgcaaaagttaaaatacttgctatgcttttatgtaaattttccctgatgctacaggtagaaagttttgtgtcatcaattatctaaacct |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39954168 |
ttccactataatgcaaaagttaaaatacttgctatgcttttatgtaaattttccctgatgctacaggtagaaagttttgtgtcatcaattatctaaacct |
39954069 |
T |
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| Q |
233 |
caataatcatgcactgcct |
251 |
Q |
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||||||||||||||||||| |
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| T |
39954068 |
caataatcatgcactgcct |
39954050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 1685608 - 1685651
Alignment:
| Q |
33 |
caaccgagcagaccagctataaaatctcattaaccttccattaa |
76 |
Q |
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| T |
1685608 |
caaccgagcagaccagctacaaaatctcattaaccttccattaa |
1685651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 39954000 - 39953963
Alignment:
| Q |
68 |
ttccattaaagttttgatgattataacaaaatagatag |
105 |
Q |
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| T |
39954000 |
ttccattaaagttttgataattataaccaaatagatag |
39953963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 37478357 - 37478400
Alignment:
| Q |
33 |
caaccgagcagaccagctataaaatctcattaaccttccattaa |
76 |
Q |
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| T |
37478357 |
caaccgagcagaccagctacaaaatctcattaaccttccattaa |
37478400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 21887028 - 21887071
Alignment:
| Q |
33 |
caaccgagcagaccagctataaaatctcattaaccttccattaa |
76 |
Q |
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| T |
21887028 |
caaccaagcagaccagctacaaaatctcattaaccttccattaa |
21887071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 52037949 - 52037992
Alignment:
| Q |
33 |
caaccgagcagaccagctataaaatctcattaaccttccattaa |
76 |
Q |
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| T |
52037949 |
caaccgagcagaccagctacaaaatctcattaaccttccattaa |
52037992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 32709653 - 32709594
Alignment:
| Q |
194 |
tacaggtagaaagttttgtgtcatca--attatctaaacctcaataatcatgcactgcct |
251 |
Q |
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||||||| |||| ||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
32709653 |
tacaggttgaaatttttgtgtcatcacaattatctgaacctcaataatcatgcactgcct |
32709594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 44800148 - 44800105
Alignment:
| Q |
33 |
caaccgagcagaccagctataaaatctcattaaccttccattaa |
76 |
Q |
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||||||||||||||| ||| ||||||||||||| |||||||||| |
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| T |
44800148 |
caaccgagcagaccaactacaaaatctcattaatcttccattaa |
44800105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 41053291 - 41053248
Alignment:
| Q |
33 |
caaccgagcagaccagctataaaatctcattaaccttccattaa |
76 |
Q |
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||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
41053291 |
caaccgagcagaccagctacaaaatctcattaaacttccattaa |
41053248 |
T |
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