View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11582_low_60 (Length: 234)
Name: NF11582_low_60
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_low_60 |
 | |
|
| [»] scaffold0042 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 14874989 - 14875187
Alignment:
| Q |
18 |
aggcatttgaaaacgtaacccttcttggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgagggtcttacaaattcaggtgcacac |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14874989 |
aggcatttgataacgtaacccttcttggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgagggtcttacaaattcaggggcacac |
14875088 |
T |
|
| Q |
118 |
ctcttcactttgaatactagagattgggccataattatgatctaatgagggaggttataatttaacaatacttaataatggttttggatgctatggtat |
216 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14875089 |
ctcttcactttgaataccagagattgggccataattatgatctaatgagggaggttataatttaacaatacttaataatggttttggatgctatggtat |
14875187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 14789837 - 14789994
Alignment:
| Q |
23 |
tttgaaaacgtaacccttcttggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgagggtcttacaaattcaggtgcacacctctt |
122 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
14789837 |
tttgataacgtaatccttcttggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgatggtcttacaaattcagtggcacacctctt |
14789936 |
T |
|
| Q |
123 |
cactttgaatactagagattgggccataattatgatctaatgagggaggttataattt |
180 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
14789937 |
cactttgaatactagagattgagccataattatgaactaatgagggaagttataattt |
14789994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 22 - 152
Target Start/End: Original strand, 14769787 - 14769917
Alignment:
| Q |
22 |
atttgaaaacgtaacccttcttggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgagggtcttacaaattcaggtgcacacctct |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||| |
|
|
| T |
14769787 |
atttgaaaacgtaacccttcttggtcatctatgtctgaaagtaattttatttcatgaggtgttggttttgatggtcttacaaattcaggggcacttctct |
14769886 |
T |
|
| Q |
122 |
tcactttgaatactagagattgggccataat |
152 |
Q |
| |
|
||||| |||||| ||||||||||||||||| |
|
|
| T |
14769887 |
tcactgtgaataagagagattgggccataat |
14769917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 155
Target Start/End: Original strand, 14880297 - 14880412
Alignment:
| Q |
40 |
tcttggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgagggtcttacaaattcaggtgcacacctcttcactttgaatactagag |
139 |
Q |
| |
|
||||||||||| || ||||| |||| ||| |||||||| |||| |||||||| ||| ||| |||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
14880297 |
tcttggtcatcaatgtctgagagtagctttgtttcatgaagtgtgggttttgatggtgttatcaattcagggtcacgcctcttcactttgaatactagag |
14880396 |
T |
|
| Q |
140 |
attgggccataattat |
155 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
14880397 |
atttggccataattat |
14880412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 14757066 - 14756951
Alignment:
| Q |
40 |
tcttggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgagggtcttacaaattcaggtgcacacctcttcactttgaatactagag |
139 |
Q |
| |
|
||||||||||| || ||||| |||| |||| ||||||||||||| |||||||| || ||| | ||||||| ||| ||||||||| |||| ||||||| |
|
|
| T |
14757066 |
tcttggtcatcaatgtctgagagtagttttgtttcatgaggtgtgggttttgatggagttatcagttcaggttcacgcctcttcaccgtgaacactagag |
14756967 |
T |
|
| Q |
140 |
attgggccataattat |
155 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
14756966 |
catgggccataattat |
14756951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 14857438 - 14857310
Alignment:
| Q |
22 |
atttgaaaacgtaacccttcttggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgagggtcttacaaattcaggtgcacacctct |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| |||||||||| |
|
|
| T |
14857438 |
atttgaaaacgtaacccttcttggtcatctatgtctgaaagtaattttatttcatgaggtgcaggttttgatggtcttacatattcaggggcacacctct |
14857339 |
T |
|
| Q |
122 |
tcactttgaatactagagattgggccata |
150 |
Q |
| |
|
||||| |||||| |||| |||||||||| |
|
|
| T |
14857338 |
tcactgtgaataacagaggttgggccata |
14857310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 91969 - 92076
Alignment:
| Q |
42 |
ttggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgagggtcttacaaattcaggtgcacacctcttcactttgaatactagagat |
141 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||||||||||| || |||||||| || |||| ||||||||| ||| |||||| |||||||||| |||||| |
|
|
| T |
91969 |
ttggtcatctatgtctgagagtcgttttatttcatgaggagtgggttttgatggacttatcaattcaggttcactcctcttgactttgaataacagagat |
92068 |
T |
|
| Q |
142 |
tgggccat |
149 |
Q |
| |
|
|||||||| |
|
|
| T |
92069 |
tgggccat |
92076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 35368748 - 35368633
Alignment:
| Q |
40 |
tcttggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgagggtcttacaaattcaggtgcacacctcttcactttgaatactagag |
139 |
Q |
| |
|
||||| ||||| || | ||| ||| ||||||||||||||||||| | ||||| || ||| ||||||||| ||| ||||||||| |||||| ||||| |
|
|
| T |
35368748 |
tcttgatcatcaatgtttgagagtgattttatttcatgaggtgtggaatttgatggagttattaattcaggttcacgcctcttcaccgtgaatattagag |
35368649 |
T |
|
| Q |
140 |
attgggccataattat |
155 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
35368648 |
attgggccataattat |
35368633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University