View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_low_66 (Length: 213)
Name: NF11582_low_66
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_low_66 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 32329054 - 32329252
Alignment:
| Q |
15 |
acctgtgtgatagaaagtgtaaaaccaatatatgcagctactgacagggaagtaatccacgcaaaaggtgctccatatttgtaggccaatatacctgata |
114 |
Q |
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| T |
32329054 |
acctgtgtgatagaaagtgtaaaaccaatatatgcagctactgacagggaagtaatccacgcaaaaggtgctccatatttgtaggccaatatacctgata |
32329153 |
T |
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| Q |
115 |
ccatagatatctggaccgatatgtgttaaaactgttgaagttgataaaataatttacaaaaattgttcatgaaaacatagacaccaggaagtcaaaatt |
213 |
Q |
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| T |
32329154 |
ccatagatatctggatcgatatgtgttaaaactgttgaagttgataaaataatttacaaaaattgttcatgaaaacatagacaccaggaagtcaaaatt |
32329252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 32342526 - 32342668
Alignment:
| Q |
15 |
acctgtgtgatagaaagtgtaaaaccaatatatgcagctactgacagggaagtaatccacgcaaaaggtgctccatatttgtaggccaatatacctgata |
114 |
Q |
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|||||||||||||||||||||||| ||| ||| ||||| ||||||| ||| |||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
32342526 |
acctgtgtgatagaaagtgtaaaagcaacataagcagcaactgacaaggatgtaatccacgcaaaaggtgctccaaatttgtaggccagtatacctgata |
32342625 |
T |
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| Q |
115 |
ccatagatatctggaccgatatgtgttaaaactgttgaagttg |
157 |
Q |
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| T |
32342626 |
ccatagatatctggacggatatgagttaaatctgttgaagttg |
32342668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 32342697 - 32342751
Alignment:
| Q |
156 |
tgataaaataatttacaaaaattgttcatgaaaacatagacaccaggaagtcaaa |
210 |
Q |
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| T |
32342697 |
tgataaaataatttagtaaaatatttaatgaaaacatagacaccaggaagtcaaa |
32342751 |
T |
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