View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_low_9 (Length: 610)
Name: NF11582_low_9
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 20 - 601
Target Start/End: Original strand, 32346022 - 32346603
Alignment:
| Q |
20 |
ctacttaaaaggctcagtgtagttggaggcaagtattcaagaaggcaaaagatgtttcgaggttcaatgaggtaaaggtggaacaacaaggctgacgtag |
119 |
Q |
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| T |
32346022 |
ctacttaaaaggctcagtgtagttggaggcaagtattcaagaaggcaaaagatgtttcgaggttcaatgaggtaaaggtggaacaacaaggctgacgtaa |
32346121 |
T |
|
| Q |
120 |
acatcctaaagtatacattttatttttgtgttatcttaagagaaataaacgaaattatggtaccactgtaagaaccaagttgattaagaaacaatacctc |
219 |
Q |
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| T |
32346122 |
acatcctaaagtatacattttatttttgtgttatcttaagagaaataaacgaaattatggtaccactgtaagaatcaagttggttaagaaacaatacctc |
32346221 |
T |
|
| Q |
220 |
gcaattgatgttttgattctaacaaagtaaaggaacaatttatctatgaaatgtgtgttcaagtgcgtaagacataagtactaattagataacgtcaata |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32346222 |
gcaattgatgttttgattctaacaaagtaaaggaacaaattgtctataaaatgtgtgttcaagtgcgtaagacctaagtactaattagataacgtcaata |
32346321 |
T |
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| Q |
320 |
atcatctttatccagctagtagaacacaacaagaagtaaaagacactatataatcaattctagtcagcatacaaaattagttagaaaaagtaaatttaga |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32346322 |
atcatctttatccagctagtagaacacaacaagaagtaaaagacactatataatcaattctagtcagcatacaaaattagttaggaaaagtaaatttaga |
32346421 |
T |
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| Q |
420 |
agcattcatcttgtcaaagaatcagctctgtaaagcatagtgaatgaaagcattatccgtagctctaatcttcggtactacnnnnnnngcatctaatata |
519 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| |
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| T |
32346422 |
agcattcatcttgtcaaagaatcagctctggaaagcatagtgaatgaaagcattatctgtagctctaatcttcggtactacaaaaaaagcatctaacata |
32346521 |
T |
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| Q |
520 |
ttggtaaacaagcatatgtccaagatatttattaaacatatgataaagtttatgacgaatcaagtgtctcacagtttcatct |
601 |
Q |
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| T |
32346522 |
ttggtaaacaagcatatgtccaagatatttattaaacatatgatagagtttatgacgaatcaagtgtctcacagttccatct |
32346603 |
T |
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