View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11583_high_1 (Length: 348)

Name: NF11583_high_1
Description: NF11583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11583_high_1
NF11583_high_1
[»] chr2 (5 HSPs)
chr2 (69-205)||(28634240-28634376)
chr2 (70-205)||(41363474-41363609)
chr2 (74-205)||(44679390-44679521)
chr2 (70-199)||(11925256-11925385)
chr2 (78-150)||(7885410-7885482)
[»] chr4 (11 HSPs)
chr4 (68-205)||(55584606-55584743)
chr4 (70-205)||(53437444-53437579)
chr4 (70-205)||(53438877-53439012)
chr4 (75-205)||(46670803-46670933)
chr4 (70-205)||(16420666-16420800)
chr4 (69-199)||(9341538-9341668)
chr4 (70-199)||(9352640-9352769)
chr4 (69-199)||(6673066-6673196)
chr4 (75-198)||(42515084-42515199)
chr4 (91-194)||(987915-988020)
chr4 (207-244)||(55585393-55585430)
[»] chr7 (9 HSPs)
chr7 (70-205)||(9953568-9953703)
chr7 (70-205)||(23410104-23410240)
chr7 (70-193)||(25138090-25138213)
chr7 (70-199)||(30759064-30759193)
chr7 (70-205)||(23688245-23688380)
chr7 (70-199)||(7747905-7748034)
chr7 (78-193)||(42779220-42779333)
chr7 (105-194)||(28753830-28753921)
chr7 (77-113)||(45280145-45280181)
[»] scaffold0049 (2 HSPs)
scaffold0049 (204-333)||(38948-39077)
scaffold0049 (70-199)||(38164-38293)
[»] chr6 (10 HSPs)
chr6 (70-205)||(2867949-2868084)
chr6 (70-205)||(2880408-2880543)
chr6 (70-205)||(35024158-35024293)
chr6 (70-199)||(33354476-33354605)
chr6 (86-195)||(31472676-31472787)
chr6 (79-195)||(31499238-31499356)
chr6 (147-199)||(28872158-28872210)
chr6 (70-156)||(20026617-20026702)
chr6 (66-195)||(31513749-31513880)
chr6 (79-195)||(31493852-31493970)
[»] chr5 (2 HSPs)
chr5 (70-205)||(41586380-41586515)
chr5 (115-198)||(32484162-32484245)
[»] chr3 (7 HSPs)
chr3 (70-210)||(11773143-11773283)
chr3 (70-199)||(12678425-12678554)
chr3 (70-199)||(21222075-21222204)
chr3 (70-193)||(36530208-36530330)
chr3 (70-193)||(27088211-27088334)
chr3 (70-193)||(36533651-36533773)
chr3 (115-151)||(560196-560232)
[»] scaffold0434 (2 HSPs)
scaffold0434 (70-205)||(11591-11726)
scaffold0434 (233-318)||(10812-10898)
[»] scaffold0144 (1 HSPs)
scaffold0144 (70-205)||(39682-39817)
[»] scaffold0210 (1 HSPs)
scaffold0210 (68-199)||(22873-23004)
[»] scaffold0007 (2 HSPs)
scaffold0007 (70-205)||(276071-276202)
scaffold0007 (233-333)||(275278-275379)
[»] chr8 (11 HSPs)
chr8 (70-199)||(10333333-10333462)
chr8 (69-199)||(9330771-9330901)
chr8 (76-198)||(40455355-40455477)
chr8 (72-192)||(14647317-14647436)
chr8 (94-195)||(12104078-12104179)
chr8 (1-65)||(5568039-5568103)
chr8 (78-194)||(14663960-14664076)
chr8 (77-200)||(14641699-14641821)
chr8 (136-195)||(26180003-26180062)
chr8 (70-143)||(10236511-10236584)
chr8 (112-153)||(12071137-12071177)
[»] chr1 (3 HSPs)
chr1 (70-199)||(36216191-36216320)
chr1 (70-166)||(35765125-35765221)
chr1 (70-120)||(30440854-30440904)


Alignment Details
Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 69 - 205
Target Start/End: Complemental strand, 28634376 - 28634240
Alignment:
Q  69 atgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaata 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28634376 atgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatattgtcgaata 28634277  T
Q  169 atatttataacttaattgaacaaaaaggtactgaatt 205  Q
    |||||||||||||||||||||||||||||||||||||    
T  28634276 atatttataacttaattgaacaaaaaggtactgaatt 28634240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 70 - 205
Target Start/End: Complemental strand, 41363609 - 41363474
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  41363609 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagatcgagtgtcgaactcgaggatcgcgttatactgtcgaatat 41363510  T
Q  170 tatttataacttaattgaacaaaaaggtactgaatt 205  Q
    ||||||||||||||| ||||||||||||||| ||||    
T  41363509 tatttataacttaatcgaacaaaaaggtacttaatt 41363474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 74 - 205
Target Start/End: Original strand, 44679390 - 44679521
Alignment:
Q  74 agcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatatt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44679390 agcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaatagtatt 44679489  T
Q  174 tataacttaattgaacaaaaaggtactgaatt 205  Q
    ||||||||||||||||||||| || |||||||    
T  44679490 tataacttaattgaacaaaaatgtgctgaatt 44679521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 70 - 199
Target Start/End: Original strand, 11925256 - 11925385
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11925256 tgatagcgattttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagaccgagtgtcgaactcaaggatcgcgttatactgtcgaataa 11925355  T
Q  170 tatttataacttaattgaacaaaaaggtac 199  Q
    || || | ||||||||||||||||||||||    
T  11925356 tacttgttacttaattgaacaaaaaggtac 11925385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 7885410 - 7885482
Alignment:
Q  78 attttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatc 150  Q
    ||||| ||||||||||   |||||| |||||||||||||||||||||||||  |||||| |||||| ||||||    
T  7885410 atttttgcaagtgtacatgatcgtgtaagtagtaaaattaaaacggtaagattgagtgttgaactcaaggatc 7885482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 68 - 205
Target Start/End: Original strand, 55584606 - 55584743
Alignment:
Q  68 gatgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaat 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  55584606 gatgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaacgagtgtcgaactcgaggatcgcgttatactgtcgaat 55584705  T
Q  168 aatatttataacttaattgaacaaaaaggtactgaatt 205  Q
    | ||||||||||||||||||||||||||||||||||||    
T  55584706 agtatttataacttaattgaacaaaaaggtactgaatt 55584743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 70 - 205
Target Start/End: Complemental strand, 53437579 - 53437444
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  53437579 tgatagcgattttcgcaagtgtacaaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaatag 53437480  T
Q  170 tatttataacttaattgaacaaaaaggtactgaatt 205  Q
    ||||||||||||||||||||||||||||||||||||    
T  53437479 tatttataacttaattgaacaaaaaggtactgaatt 53437444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 70 - 205
Target Start/End: Complemental strand, 53439012 - 53438877
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  53439012 tgatagcgattttcgcaagtgtacaaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaatag 53438913  T
Q  170 tatttataacttaattgaacaaaaaggtactgaatt 205  Q
    ||||||||||||||||||||||||||||||||||||    
T  53438912 tatttataacttaattgaacaaaaaggtactgaatt 53438877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 75 - 205
Target Start/End: Original strand, 46670803 - 46670933
Alignment:
Q  75 gcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatattt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||    
T  46670803 gcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagatcgagtattaaactcgaggatcgcgttatactgtcgaataatattt 46670902  T
Q  175 ataacttaattgaacaaaaaggtactgaatt 205  Q
    |||||||||||||||||||||||||||||||    
T  46670903 ataacttaattgaacaaaaaggtactgaatt 46670933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 70 - 205
Target Start/End: Complemental strand, 16420800 - 16420666
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    |||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16420800 tgatagcgattttcgcaagtgtacaaaatcgttcaagtagtaaatttaaa-cggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 16420702  T
Q  170 tatttataacttaattgaacaaaaaggtactgaatt 205  Q
    ||||| | ||||||||||||||||||||||||||||    
T  16420701 tatttgtgacttaattgaacaaaaaggtactgaatt 16420666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 69 - 199
Target Start/End: Original strand, 9341538 - 9341668
Alignment:
Q  69 atgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaata 168  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  9341538 atgatagcggttttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagaccgagtgtcgaactcaaggatcgcgttatactgtcgaaaa 9341637  T
Q  169 atatttataacttaattgaacaaaaaggtac 199  Q
    ||| || | ||||||||||||||||||||||    
T  9341638 atacttgttacttaattgaacaaaaaggtac 9341668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 70 - 199
Target Start/End: Original strand, 9352640 - 9352769
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  9352640 tgatagcggttttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagaccgagtgtcgaactcaaggatcgcgttatactgtcgaaaaa 9352739  T
Q  170 tatttataacttaattgaacaaaaaggtac 199  Q
    || || | ||||||||||||||||||||||    
T  9352740 tacttgttacttaattgaacaaaaaggtac 9352769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 69 - 199
Target Start/End: Original strand, 6673066 - 6673196
Alignment:
Q  69 atgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaata 168  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||||| || ||||||||||||||||||||     
T  6673066 atgatagcgattttcgcaagtgtacgaaatcgttcaagtagtaaattttaaacgttaagaccgagtgtcgaactcaagaatcgcgttatactgtcgaatg 6673165  T
Q  169 atatttataacttaattgaacaaaaaggtac 199  Q
    ||| || | ||||||||||||||||||||||    
T  6673166 atacttgttacttaattgaacaaaaaggtac 6673196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 75 - 198
Target Start/End: Original strand, 42515084 - 42515199
Alignment:
Q  75 gcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatattt 174  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||| |||| ||||||        |||||||||    
T  42515084 gcgattttcgcaagtgtatgaaatcgtgcaagtagtaaaattaaaacggtaagactgagtctcgaactcgaagatctcgttat--------ataatattt 42515175  T
Q  175 ataacttaattgaacaaaaaggta 198  Q
     | |||||||||||||||||||||    
T  42515176 gtgacttaattgaacaaaaaggta 42515199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 91 - 194
Target Start/End: Complemental strand, 988020 - 987915
Alignment:
Q  91 tacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatattt--ataacttaattgaa 188  Q
    |||||||||||  ||||||||||||||||||||||||| ||| ||||||||||||| ||| ||||||| ||||||||| |||||  |||| |||||||||    
T  988020 tacgaaatcgtataagtagtaaaattaaaacggtaagatcgaatgtcgaactcgagaatcacgttatattgtcgaatattatttacataatttaattgaa 987921  T
Q  189 caaaaa 194  Q
    ||||||    
T  987920 caaaaa 987915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 55585393 - 55585430
Alignment:
Q  207 gttctcctctcgttttccaaccctcgtattcttctttt 244  Q
    |||||||||||| |||||||||||||||||||||||||    
T  55585393 gttctcctctcggtttccaaccctcgtattcttctttt 55585430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 70 - 205
Target Start/End: Original strand, 9953568 - 9953703
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9953568 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaatga 9953667  T
Q  170 tatttataacttaattgaacaaaaaggtactgaatt 205  Q
    ||||||||||||||||||||||||||||||| ||||    
T  9953668 tatttataacttaattgaacaaaaaggtactcaatt 9953703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 70 - 205
Target Start/End: Complemental strand, 23410240 - 23410104
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaa-tcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaata 168  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23410240 tgatagcgattttcacaagtgtacgaaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaata 23410141  T
Q  169 atatttataacttaattgaacaaaaaggtactgaatt 205  Q
     |||||||||||||||||||||||||||| |||||||    
T  23410140 gtatttataacttaattgaacaaaaaggtcctgaatt 23410104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 70 - 193
Target Start/End: Complemental strand, 25138213 - 25138090
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25138213 tgatagcgattttcgtaagtgtacgaaatcgtgtaagtagtaaaattaaaacggtaagatcgagtgtcgaactcgaggatcgcgttatactgtcgaataa 25138114  T
Q  170 tatttataacttaattgaacaaaa 193  Q
    ||||||||||||||||||||||||    
T  25138113 tatttataacttaattgaacaaaa 25138090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 30759193 - 30759064
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30759193 tgatagcggttttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagaccgagtgtcgaactcaaggatcgcgttatactgtcgaataa 30759094  T
Q  170 tatttataacttaattgaacaaaaaggtac 199  Q
    || || | ||||||||||||||||||||||    
T  30759093 tacttgttacttaattgaacaaaaaggtac 30759064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 70 - 205
Target Start/End: Original strand, 23688245 - 23688380
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| || |||| |||||||||||||||||    
T  23688245 tgatagcgattttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagaccgagtgtcaaactcaagaatcgtgttatactgtcgaataa 23688344  T
Q  170 tatttataacttaattgaacaaaaaggtactgaatt 205  Q
    || ||   ||||||||||||||||||||||||||||    
T  23688345 tacttgctacttaattgaacaaaaaggtactgaatt 23688380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 7748034 - 7747905
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    ||||| ||||||||||||||  ||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  7748034 tgataacgattttcgcaagttaacgaaattgtgcaagtagtaaaattaaatcggtaagaccgagtgtcgaactcgaagatcgtgttatactgtcgaataa 7747935  T
Q  170 tatttataacttaattgaacaaaaaggtac 199  Q
    || |  | |||||| |||||||||||||||    
T  7747934 tactcgttacttaagtgaacaaaaaggtac 7747905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 78 - 193
Target Start/End: Original strand, 42779220 - 42779333
Alignment:
Q  78 attttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatatttata 177  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||| ||| | |||||| |||||  |||||||    
T  42779220 attttcgcaagtgtacgaaatcgtgcaagtagtaa--ttaaaacggtaagaccgagtatcgaactcgaggattgcggtttactgttgaataggatttata 42779317  T
Q  178 acttaattgaacaaaa 193  Q
    ||||||||||||||||    
T  42779318 acttaattgaacaaaa 42779333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 28753830 - 28753921
Alignment:
Q  105 agtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaat--aatatttataacttaattgaacaaaaa 194  Q
    |||| |||||||||||||||||||   |||||| |||||||||| | | ||||||| || |||   |||||||||| ||||| |||||||||    
T  28753830 agtaataaaattaaaacggtaagattaagtgtcaaactcgaggaccacattatactatcaaattatatatttataatttaatagaacaaaaa 28753921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 45280145 - 45280181
Alignment:
Q  77 gattttcgcaagtgtacgaaatcgtgcaagtagtaaa 113  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  45280145 gattttcacaagtgtacgaaatcgttcaagtagtaaa 45280181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 204 - 333
Target Start/End: Original strand, 38948 - 39077
Alignment:
Q  204 ttcgttctcctctcgttttccaaccctcgtattcttcttttcttggcttttatacacgccctctatgatataagctcctccacgtgtgccaaatttttag 303  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38948 ttcgttctcctctcgttttccaaccctcgtattcttctttttttggcttttatacacgccctctatgatataagctcctccacgtgtgccaaatttttag 39047  T
Q  304 gctttctttactctcattcgctggaccttt 333  Q
    ||||||||||||||||||||||||||||||    
T  39048 gctttctttactctcattcgctggaccttt 39077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 70 - 199
Target Start/End: Original strand, 38164 - 38293
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38164 tgatagcgattttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagaccgagtgtcgaactcaaggatcgcgttatactgtcgaataa 38263  T
Q  170 tatttataacttaattgaacaaaaaggtac 199  Q
    || || | ||||||||||||||||||||||    
T  38264 tacttgttacttaattgaacaaaaaggtac 38293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 70 - 205
Target Start/End: Complemental strand, 2868084 - 2867949
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2868084 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccaagtgtcgaactcgaggatcgcgttatactgtcgaataa 2867985  T
Q  170 tatttataacttaattgaacaaaaaggtactgaatt 205  Q
    ||||| | ||||||||||||||||||||||||||||    
T  2867984 tatttgtgacttaattgaacaaaaaggtactgaatt 2867949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 70 - 205
Target Start/End: Complemental strand, 2880543 - 2880408
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2880543 tgatagcgattttcgccagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 2880444  T
Q  170 tatttataacttaattgaacaaaaaggtactgaatt 205  Q
    ||||| | ||||||||||||||||||||||||||||    
T  2880443 tatttgtgacttaattgaacaaaaaggtactgaatt 2880408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 70 - 205
Target Start/End: Complemental strand, 35024293 - 35024158
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35024293 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 35024194  T
Q  170 tatttataacttaattgaacaaaaaggtactgaatt 205  Q
    ||||| | | |||||||||||||||| |||||||||    
T  35024193 tatttgtgatttaattgaacaaaaagttactgaatt 35024158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 33354605 - 33354476
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33354605 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtaataaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcaaataa 33354506  T
Q  170 tatttataacttaattgaacaaaaaggtac 199  Q
    ||||| | ||||||||||||||||||||||    
T  33354505 tatttgttacttaattgaacaaaaaggtac 33354476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 195
Target Start/End: Original strand, 31472676 - 31472787
Alignment:
Q  86 aagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataata---tttataactta 182  Q
    |||||||||||||||||||| ||||||| ||||||||| || | | ||||| |||||||||||  |||| ||| ||||||||  ||   |||| ||||||    
T  31472676 aagtgtacgaaatcgtgcaattagtaaagttaaaacgg-aaaaacaagtgttgaactcgaggactgcgtcatattgtcgaattgtatattttaaaactta 31472774  T
Q  183 attgaacaaaaag 195  Q
    |||||||||||||    
T  31472775 attgaacaaaaag 31472787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 31499238 - 31499356
Alignment:
Q  79 ttttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataata---ttta 175  Q
    |||| |||||||||||||||| || || ||||||| ||||||||| || | | ||||| ||||||||||| ||||| ||| ||||||||  ||   ||||    
T  31499238 tttttgcaagtgtacgaaatcatgtaattagtaaagttaaaacgg-aaaaacaagtgttgaactcgaggaccgcgtcatattgtcgaattgtatatttta 31499336  T
Q  176 taacttaattgaacaaaaag 195  Q
     |||||||||||||||||||    
T  31499337 aaacttaattgaacaaaaag 31499356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 28872210 - 28872158
Alignment:
Q  147 gatcgcgttatactgtcgaataatatttataacttaattgaacaaaaaggtac 199  Q
    ||||||||||||||||||||| ||| || | ||||||||||||||||||||||    
T  28872210 gatcgcgttatactgtcgaatgatacttgttacttaattgaacaaaaaggtac 28872158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 156
Target Start/End: Complemental strand, 20026702 - 20026617
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgtta 156  Q
    |||||||||||||  ||||||||||||||||| |||||||| ||||| |||||||||    ||||||| |||| |||| ||||||||    
T  20026702 tgatagcgatttttacaagtgtacgaaatcgtacaagtagt-aaatttaaacggtaactttgagtgtcaaacttgagggtcgcgtta 20026617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 195
Target Start/End: Original strand, 31513749 - 31513880
Alignment:
Q  66 aagatgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcga 165  Q
    ||||||||| ||||||| |||||||||| |||||||  || ||||||| ||||||||| || ||  ||||| |||||||||||  |||| ||| ||||||    
T  31513749 aagatgataccgatttttgcaagtgtacaaaatcgtataattagtaaagttaaaacggaaaaaca-agtgttgaactcgaggactgcgtcatattgtcga 31513847  T
Q  166 ataata---tttataacttaattgaacaaaaag 195  Q
    ||  ||   |||| ||||| |||||||||||||    
T  31513848 attgtatattttaaaactttattgaacaaaaag 31513880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 31493852 - 31493970
Alignment:
Q  79 ttttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataata---ttta 175  Q
    |||| |||||||||||||||| || || ||||||| ||||||||| || | | ||||| |||||||||||  |||| ||| ||||||||  ||   ||||    
T  31493852 tttttgcaagtgtacgaaatcatgtaattagtaaagttaaaacgg-aaaaacaagtgttgaactcgaggactgcgtcatattgtcgaattgtatatttta 31493950  T
Q  176 taacttaattgaacaaaaag 195  Q
     |||||||||||||||||||    
T  31493951 aaacttaattgaacaaaaag 31493970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 70 - 205
Target Start/End: Complemental strand, 41586515 - 41586380
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41586515 tgatagcgattttcgcaagtgtaagaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 41586416  T
Q  170 tatttataacttaattgaacaaaaaggtactgaatt 205  Q
    ||||| | ||||||||||||||||||||||||||||    
T  41586415 tatttttgacttaattgaacaaaaaggtactgaatt 41586380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 115 - 198
Target Start/End: Complemental strand, 32484245 - 32484162
Alignment:
Q  115 ttaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatatttataacttaattgaacaaaaaggta 198  Q
    |||||| ||||||||||||||||||| | |||| |||||||||| ||||||||| |||||||||||||| | ||||||||||||    
T  32484245 ttaaaatggtaagaccgagtgtcgaatttgaggttcgcgttataatgtcgaatactatttataacttaactaaacaaaaaggta 32484162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 6e-62; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 70 - 210
Target Start/End: Original strand, 11773143 - 11773283
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||     
T  11773143 tgatagcgattttcgcaagtgtacgaaatcatgcaagtagtaaaattaaaacggtaagaccgagtgtggaactcgaggatcgtgttatactgtcgaatag 11773242  T
Q  170 tatttataacttaattgaacaaaaaggtactgaattcgttc 210  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  11773243 tatttataacttaattgaacaaaaaggtactgaatttgttc 11773283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 70 - 199
Target Start/End: Original strand, 12678425 - 12678554
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12678425 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagatcgagtgtcgaactcgaggatcgcgttatactgtcgaataa 12678524  T
Q  170 tatttataacttaattgaacaaaaaggtac 199  Q
    || || | ||||||||||||||||||||||    
T  12678525 tacttgttacttaattgaacaaaaaggtac 12678554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 21222204 - 21222075
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  21222204 tgataacgattttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagatcgagtgtcgaactcaaggatcgcgttatactgtcgaataa 21222105  T
Q  170 tatttataacttaattgaacaaaaaggtac 199  Q
    || || | ||||||||||||||||||||||    
T  21222104 tacttgttacttaattgaacaaaaaggtac 21222075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 70 - 193
Target Start/End: Complemental strand, 36530330 - 36530208
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | || ||| |||||     
T  36530330 tgatggcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaat-aaaacggtaagaccgagtgtcgaactcgaggattgcggtttaatgttgaatag 36530232  T
Q  170 tatttataacttaattgaacaaaa 193  Q
     |||||| ||||||||||||||||    
T  36530231 aatttatgacttaattgaacaaaa 36530208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 70 - 193
Target Start/End: Original strand, 27088211 - 27088334
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||  |||||| ||||||| ||||  |||||||| | |||||     
T  27088211 tgatagcgattttcgctactgtacgaaatcgtgcaagtagtaaaattaaaacggtaagacacagtgtcaaactcgaagatcatgttatactattgaatag 27088310  T
Q  170 tatttataacttaattgaacaaaa 193  Q
    | ||||||||||||||||||||||    
T  27088311 tgtttataacttaattgaacaaaa 27088334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 70 - 193
Target Start/End: Complemental strand, 36533773 - 36533651
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | || ||  |||||     
T  36533773 tgatggcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaat-aaaacggtaagaccgagtgtcgaactcgaggattgcggtttaatgatgaatag 36533675  T
Q  170 tatttataacttaattgaacaaaa 193  Q
     |||||| ||||||||||||||||    
T  36533674 aatttatgacttaattgaacaaaa 36533651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 560232 - 560196
Alignment:
Q  115 ttaaaacggtaagaccgagtgtcgaactcgaggatcg 151  Q
    ||||||||||||||||||||||||||||| |||||||    
T  560232 ttaaaacggtaagaccgagtgtcgaactcaaggatcg 560196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 70 - 205
Target Start/End: Complemental strand, 11726 - 11591
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||     
T  11726 tgatagcgattttcgtaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagatcgagtgtcgaactcgaggatcgcgttataccgtcgaatag 11627  T
Q  170 tatttataacttaattgaacaaaaaggtactgaatt 205  Q
    ||||||||||||||||||||||||||||||||||||    
T  11626 tatttataacttaattgaacaaaaaggtactgaatt 11591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 233 - 318
Target Start/End: Complemental strand, 10898 - 10812
Alignment:
Q  233 tattcttctttt-cttggcttttatacacgccctctatgatataagctcctccacgtgtgccaaatttttaggctttctttactctc 318  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10898 tattcttcttttacttggcttttatacacgccctctatgatataagctcctccacgtgtgccaaatttttaggctttctttactctc 10812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 70 - 205
Target Start/End: Original strand, 39682 - 39817
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||     
T  39682 tgatagcgattttcgcaaatgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggattgcgttatactctcgaatag 39781  T
Q  170 tatttataacttaattgaacaaaaaggtactgaatt 205  Q
    ||||||||||||||||||||||||||||||||||||    
T  39782 tatttataacttaattgaacaaaaaggtactgaatt 39817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 22873 - 23004
Alignment:
Q  68 gatgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaat 167  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  22873 gatgctagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacagtaagatcgagtgtcgaactcgaggatcgcgttatactgtcgaat 22972  T
Q  168 aatatttataacttaattgaacaaaaaggtac 199  Q
    |||| || | ||||||||||||||||||||||    
T  22973 aatacttgttacttaattgaacaaaaaggtac 23004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 70 - 205
Target Start/End: Complemental strand, 276202 - 276071
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    |    
T  276202 tgatagtgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtttcgaactcgaggatcgcgttatattgtcg----a 276107  T
Q  170 tatttataacttaattgaacaaaaaggtactgaatt 205  Q
    |||||||||||||||||||||||||||||| |||||    
T  276106 tatttataacttaattgaacaaaaaggtaccgaatt 276071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 233 - 333
Target Start/End: Complemental strand, 275379 - 275278
Alignment:
Q  233 tattcttctttt-cttggcttttatacacgccctctatgatataagctcctccacgtgtgccaaatttttaggctttctttactctcattcgctggacct 331  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||    
T  275379 tattcttcttttacttagcttttatacacgccctctatgatataagctcctccacgtcttccaaatttttaggctttctttactctcattcactggacct 275280  T
Q  332 tt 333  Q
    ||    
T  275279 tt 275278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 10333462 - 10333333
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  10333462 tgatagcggttttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagaccgagtgtcgaactcaaggatcgcgttatactgtcgaaaaa 10333363  T
Q  170 tatttataacttaattgaacaaaaaggtac 199  Q
    || || | ||||||||||||||||||||||    
T  10333362 tacttgttacttaattgaacaaaaaggtac 10333333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 69 - 199
Target Start/End: Complemental strand, 9330901 - 9330771
Alignment:
Q  69 atgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaata 168  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| ||||     
T  9330901 atgatagcgattttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagagcgagtgtcgaactcaaggatcgcgttatactgttgaatg 9330802  T
Q  169 atatttataacttaattgaacaaaaaggtac 199  Q
    ||| ||   ||||||||||||||||||||||    
T  9330801 atacttgagacttaattgaacaaaaaggtac 9330771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 76 - 198
Target Start/End: Complemental strand, 40455477 - 40455355
Alignment:
Q  76 cgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatattta 175  Q
    ||||||| ||||||||| |||||| |||||| ||||||||||||||||| |||| |||||| || ||||||||||| |||||||| || |||||||||||    
T  40455477 cgatttttgcaagtgtatgaaatcatgcaagcagtaaaattaaaacggtgagactgagtgtagagctcgaggatcgtgttatactatcaaataatattta 40455378  T
Q  176 taacttaattgaacaaaaaggta 198  Q
    | |||||| | ||||||||||||    
T  40455377 tgacttaactaaacaaaaaggta 40455355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 72 - 192
Target Start/End: Original strand, 14647317 - 14647436
Alignment:
Q  72 atagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataata 171  Q
    ||||| |||||||||||||| ||||||| || ||||||||||||||||| ||||| ||||||||| |||||||||||| |||||||||| ||||||||||    
T  14647317 atagcaattttcgcaagtgttcgaaatcatgaaagtagtaaaattaaaatggtaaaaccgagtgt-gaactcgaggattgcgttatactatcgaataata 14647415  T
Q  172 tttataacttaattgaacaaa 192  Q
     |||||  |||||||| ||||    
T  14647416 attatattttaattgatcaaa 14647436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 195
Target Start/End: Complemental strand, 12104179 - 12104078
Alignment:
Q  94 gaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatatttataacttaattgaacaaaa 193  Q
    |||||||||||| |||||||||||||| ||||||||||||| || ||||||||||||| |||||||| | ||||||||||| |||| ||| | |||||||    
T  12104179 gaaatcgtgcaattagtaaaattaaaatggtaagaccgagtatcaaactcgaggatcgtgttatactcttgaataatatttttaacataactaaacaaaa 12104080  T
Q  194 ag 195  Q
    ||    
T  12104079 ag 12104078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 5568103 - 5568039
Alignment:
Q  1 acagtgaaacacagacactgattgttcattattttattagaggaaagctagttttagagtattgt 65  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5568103 acagggaaacacagacactgattgttcattattttattagaggaaagctagttttagagcattgt 5568039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 14664076 - 14663960
Alignment:
Q  78 attttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatatttata 177  Q
    ||||||| |||||| |||||||||| || |||||||||||||| | |||||| ||||||| |||||||||| ||||||||||| | ||||||||||||||    
T  14664076 attttcgtaagtgttcgaaatcgtgaaaatagtaaaattaaaatgataagactgagtgtc-aactcgaggaccgcgttatactcttgaataatatttata 14663978  T
Q  178 -acttaattgaacaaaaa 194  Q
     | ||||||||| |||||    
T  14663977 tatttaattgaagaaaaa 14663960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 200
Target Start/End: Original strand, 14641699 - 14641821
Alignment:
Q  77 gattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatatttat 176  Q
    |||||||| |||||| | |||| ||| || |||||||||||||| |||||||||||||||| |||||||| | || |||||||||  |||||||||||||    
T  14641699 gattttcgtaagtgttcaaaattgtgaaaatagtaaaattaaaatggtaagaccgagtgtc-aactcgagtaccgtgttatactgatgaataatatttat 14641797  T
Q  177 aacttaattgaacaaaaaggtact 200  Q
    |  |||| |||| |||||| ||||    
T  14641798 attttaaatgaagaaaaagttact 14641821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 26180003 - 26180062
Alignment:
Q  136 tcgaactcgaggatcgcgttatactgtcgaataatatttataacttaattgaacaaaaag 195  Q
    |||||||||||||||  ||||||||||||||||||| ||||||||||| |||||||||||    
T  26180003 tcgaactcgaggatcatgttatactgtcgaataatacttataacttaactgaacaaaaag 26180062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 10236584 - 10236511
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactc 143  Q
    ||||| |||||||| |||||||||||||| || |||||  |||||||||||| |||||||| | |||| |||||    
T  10236584 tgataacgattttcacaagtgtacgaaattgtacaagttataaaattaaaacagtaagaccaaatgtcaaactc 10236511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 12071137 - 12071177
Alignment:
Q  112 aaattaaaacggtaagaccgagtgtcgaactcgaggatcgcg 153  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  12071137 aaattaaaacggtaagaccgagtgtc-cactcgaggatcgcg 12071177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 36216320 - 36216191
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 169  Q
    ||||| || ||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  36216320 tgataacggttttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaataccgagtgtcgaactcaaggatcgcgttatactgtcgaataa 36216221  T
Q  170 tatttataacttaattgaacaaaaaggtac 199  Q
    || || | ||||||||||||||||||||||    
T  36216220 tacttgttacttaattgaacaaaaaggtac 36216191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 35765125 - 35765221
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaa 166  Q
    ||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||| || ||||| ||| | ||||||||||    
T  35765125 tgatagcgattttcgcaagtgtacgaaatcgggcaagtggtaaacttaaaacggtaagaccgagtgtcgaattcaaggattgcgatgtactgtcgaa 35765221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 30440854 - 30440904
Alignment:
Q  70 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaa 120  Q
    ||||| ||||||| |||| ||||| ||||||||||||||| ||||||||||    
T  30440854 tgataacgatttttgcaaatgtacaaaatcgtgcaagtagcaaaattaaaa 30440904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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