View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11583_high_2 (Length: 332)
Name: NF11583_high_2
Description: NF11583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11583_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 5568174 - 5568491
Alignment:
| Q |
1 |
tgtgtttgtctttctattagtatcaataaaatatttatgtttgtcaccatatatacaagtcttgcaccaatatgagacaaataaaacccctaagtttacg |
100 |
Q |
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| T |
5568174 |
tgtgtttgtctttctattagtatcaataaaatatttatgtttgtcaccatatatacaagtcttgcaccaatatgagacaaaaaaaacccctaagtttacg |
5568273 |
T |
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| Q |
101 |
ggtcaataataatagtagtaaacgcctcagtgagagtgttccaatttcgactctttcttaaagcgcgtaatgagtggttaggtgagtatcggcgaaaaag |
200 |
Q |
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| T |
5568274 |
ggtcaataataatagtagtaaacgcctcagtgagagtgttccaattttgactctttctt-aagcgcgtaatgagtggttaggtgagtatcggcgaaaaag |
5568372 |
T |
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| Q |
201 |
cccttgaacaaatacatcttaaagtagggtccacacgccttaacaagagtttatatctctattctatttctattcctatcctatgaaccagaaagaaaga |
300 |
Q |
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| T |
5568373 |
cccttgaacatatacatcttaaagtagggtccacacgccttaactagtgtttatatctctattctatttctattcctatcctatgaaccagaaagaaaga |
5568472 |
T |
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| Q |
301 |
cacacatacatcttaaaac |
319 |
Q |
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| T |
5568473 |
cacacatacatcttaaaac |
5568491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 5572303 - 5572350
Alignment:
| Q |
228 |
ggtccacacgccttaacaagagtttatatctct-attctatttctatt |
274 |
Q |
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| T |
5572303 |
ggtccacacgccttcacaagagtttatatctctcattctatttctatt |
5572350 |
T |
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