View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11583_low_2 (Length: 498)
Name: NF11583_low_2
Description: NF11583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11583_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 139 - 483
Target Start/End: Complemental strand, 46894498 - 46894154
Alignment:
| Q |
139 |
aaaatattttgtttattgaaatgtttcaaaaagtgatttggtaagaacaatagtcaaacnnnnnnncaatatgatccttataaattcgttgagtttatta |
238 |
Q |
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| T |
46894498 |
aaaatattatgtttattgaaatgtttcaaaaagtgatttggtaagaacaatagtcaaacaaaaaaacaatatgatccttataaattcgttgagtttatta |
46894399 |
T |
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| Q |
239 |
tgtttctttagattattatagtgccatataaaaaataagcttgttctggattgtaggcaacatgaatcctagaggcaatacgaatcctctaggcgatgat |
338 |
Q |
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| T |
46894398 |
tgtttctttagattattatagtgccatataaaaaataagcttgttctggattgtaggcaacatgaatcctagaggcaatacgaatcctctaggcgatgat |
46894299 |
T |
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| Q |
339 |
agccttctcagacagtttgagttagaagaagaggcagaatccgatttgctctgtgacattgatggatgcaaagctgggaatagtacatgtagtagcttga |
438 |
Q |
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| T |
46894298 |
agccttctcagacagtttgagttagaagaagaggcagaatccgatttgctctgtgacattgatggatgcaaagctgggaatagtacatgtagtagcttga |
46894199 |
T |
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| Q |
439 |
ttttggaaaaagaacattcaccaatcatgccttgcgatctctgct |
483 |
Q |
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| T |
46894198 |
ttttggaaaaagaacattcaccaatcatgccttgcgatctctgct |
46894154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 46894681 - 46894561
Alignment:
| Q |
20 |
atcacatgtatcggtgtcggacattgacatgtgccagacatcagacaagttgagaagtgttggtgctacaagagttgttatttgtttttcttgatgtgtt |
119 |
Q |
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| T |
46894681 |
atcacatgtatcg-tgtcgtacattgacatgtgccagacatcagacaagttgagaagtgttggtgctacaaaagttgttatttgtttttcttgatctgtt |
46894583 |
T |
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| Q |
120 |
aatttgattctgaaaaatgaaa |
141 |
Q |
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| T |
46894582 |
aatttgattctgaaaaatgaaa |
46894561 |
T |
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