View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11584_high_19 (Length: 362)

Name: NF11584_high_19
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11584_high_19
NF11584_high_19
[»] chr2 (3 HSPs)
chr2 (1-361)||(13448238-13448598)
chr2 (1-362)||(13454709-13455070)
chr2 (1-361)||(13440075-13440435)
[»] chr7 (1 HSPs)
chr7 (1-361)||(3417471-3417831)
[»] chr5 (2 HSPs)
chr5 (1-353)||(12540560-12540912)
chr5 (1-361)||(28385209-28385569)
[»] chr4 (5 HSPs)
chr4 (56-361)||(48958074-48958382)
chr4 (1-352)||(48965204-48965555)
chr4 (56-355)||(48961221-48961525)
chr4 (111-328)||(48912319-48912539)
chr4 (111-361)||(48974103-48974344)
[»] scaffold0536 (3 HSPs)
scaffold0536 (114-361)||(6452-6702)
scaffold0536 (111-361)||(10434-10687)
scaffold0536 (120-178)||(1580-1638)
[»] chr8 (1 HSPs)
chr8 (102-361)||(12641422-12641684)
[»] chr6 (2 HSPs)
chr6 (56-355)||(12483411-12483716)
chr6 (141-281)||(12590196-12590336)


Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 13448238 - 13448598
Alignment:
Q  1 ccttctctatgctatctctgctcactaacttctttctctccgcaacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448238 ccttctctatgctatctctgctcactaacttctttctctccgcgacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattg 13448337  T
Q  101 tgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaa 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448338 tgttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaa 13448437  T
Q  201 tgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448438 tgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaa 13448537  T
Q  301 atcccttcggtaaccacttttctttctctgctttgctctcatcttctttccctttcatctc 361  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||    
T  13448538 atcccttcggtaaccacttttctttctcttcttcgctctcatcttctttccctttcttctc 13448598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 13454709 - 13455070
Alignment:
Q  1 ccttctctatgctatctctgctcactaacttctttctctccgcaacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattg 100  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| | |||    
T  13454709 ccttctctatgctatctttgctcaccaacttctctctctccgcaacaccacttgtacaccattctgttgcaccgacttcaattccaattcctcgaacttg 13454808  T
Q  101 tgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaa 200  Q
    |||||| |||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||   ||||||||||||||| |||||||||||||||||    
T  13454809 tgttattagtttctcgttgtagaattgatctccatggactggccacgttatcattggaactcccatgctaacagcctctacgattgagttccccccgcaa 13454908  T
Q  201 tgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaa 300  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||||||||    
T  13454909 tgcgtcataaatccccccactgcagggtgactcaatatcttaacttgtggggcccaacccctaatgatcaaaccctttttctcgatgtttttctcttcaa 13455008  T
Q  301 atcccttcggtaaccacttttctttctctgctttgctctcatcttctttccctttcatctcc 362  Q
    |||||||||| |||||||||| ||||||  ||| |||||||||||||||||||||| |||||    
T  13455009 atcccttcggcaaccacttttgtttctcctcttcgctctcatcttctttccctttcttctcc 13455070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 13440075 - 13440435
Alignment:
Q  1 ccttctctatgctatctctgctcactaacttctttctctccgcaacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattg 100  Q
    ||||||||||| |||| |||||||| ||||||| |||||||||||||||| || |||||||||| |||||||||||||| |||||||||||||| |||||    
T  13440075 ccttctctatgttatccctgctcaccaacttctctctctccgcaacaccattcttacaccattccgttgcaccgacttccactccaattcctcgaaattg 13440174  T
Q  101 tgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaa 200  Q
    |||||  |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  13440175 tgttaccagtttctcgttgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagactctacaattgagttccccccgcaa 13440274  T
Q  201 tgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaa 300  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||  || ||||||||||| |    
T  13440275 tgcgtcataaatccccccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaatgatcaaacccatcctcctaatgtttctctcttcga 13440374  T
Q  301 atcccttcggtaaccacttttctttctctgctttgctctcatcttctttccctttcatctc 361  Q
    ||||||| || |||||||||||||||||| | |  ||||||||||||||||||||| ||||    
T  13440375 atccctttggcaaccacttttctttctcttcctcactctcatcttctttccctttcttctc 13440435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 3417831 - 3417471
Alignment:
Q  1 ccttctctatgctatctctgctcactaacttctttctctccgcaacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattg 100  Q
    |||||||||||  |||||||||||| ||||||||||||||| ||| ||||   | || ||||||||||||||| ||||| |||||||||||||||| |||    
T  3417831 ccttctctatgtcatctctgctcaccaacttctttctctccccaataccatgtgcacgccattctgttgcacctacttccactccaattcctcggacttg 3417732  T
Q  101 tgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaa 200  Q
    |||||| |||||||||||| | ||||||||||||||| ||||||| ||||||||||||||||| |||| ||||||||| ||   |||||||||||| |||    
T  3417731 tgttattagtttctcattgaacaattgatctccatgacccggccacgttatcattggaactcctgcaccaacagcctcaacaaatgagttccccccacaa 3417632  T
Q  201 tgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaa 300  Q
    || |||||||||||||| || ||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| || || |||||||| ||||    
T  3417631 tgtgtcataaatccccctaccgcagggtggctcaatatctgaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaa 3417532  T
Q  301 atcccttcggtaaccacttttctttctctgctttgctctcatcttctttccctttcatctc 361  Q
    |||||||||| |||||||||||||||||| ||| | ||||||||||||| |||||| ||||    
T  3417531 atcccttcggcaaccacttttctttctcttcttcgttctcatcttcttttcctttcttctc 3417471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 12540560 - 12540912
Alignment:
Q  1 ccttctctatgctatctctgctcactaacttctttctctccgcaacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattg 100  Q
    |||||||||||| ||||||||  || ||||||||||||||| ||  |||| | |||||||||||||||||||| ||||| ||||||||||||||||  ||    
T  12540560 ccttctctatgccatctctgccaaccaacttctttctctccccattaccatttgtacaccattctgttgcacctacttctactccaattcctcggacctg 12540659  T
Q  101 tgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaa 200  Q
    |||||| |||||||| ||| | || ||||||||||||  |||||| |||||||||||||||||||||| ||||||||||||  ||||||| ||||| |||    
T  12540660 tgttattagtttctcgttgaataagtgatctccatgacacggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaa 12540759  T
Q  201 tgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaa 300  Q
    || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || || |||||||| ||||    
T  12540760 tgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttttttccaatgtttctctcctcaa 12540859  T
Q  301 atcccttcggtaaccacttttctttctctgctttgctctcatcttctttccct 353  Q
    |||||||||| | |||||||||||||||| |||   |||||||||||||||||    
T  12540860 atcccttcggcatccacttttctttctcttcttcagtctcatcttctttccct 12540912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 28385209 - 28385569
Alignment:
Q  1 ccttctctatgctatctctgctcactaacttctttctctccgcaacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattg 100  Q
    ||||||||||| ||||||||||||| ||||||||||||||| ||  |||| | ||||||||||| ||| |||| ||||| |||||||||| ||||| |      
T  28385209 ccttctctatgttatctctgctcaccaacttctttctctccccattaccatttgtacaccattccgttacacctacttccactccaattcttcggactgt 28385308  T
Q  101 tgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaa 200  Q
    |||||| | ||||||||||  ||| |||||| |||||   ||||| |||||||||||||||||||| | ||||||||||||  |||||||||| ||||||    
T  28385309 tgttatcaatttctcattgctgaagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaacagcctctacaattgagttccctccgcaa 28385408  T
Q  201 tgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaa 300  Q
    || |||| |||||||||||| ||||||| ||||||||||  ||||||||||||||||||||| || || ||||||||||| || || |||||||| ||||    
T  28385409 tgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcctcaa 28385508  T
Q  301 atcccttcggtaaccacttttctttctctgctttgctctcatcttctttccctttcatctc 361  Q
    ||||||| || | |||||||||||||||| ||| | |||||||||||||||||||| ||||    
T  28385509 atccctttggcagccacttttctttctcttcttcgatctcatcttctttccctttcttctc 28385569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 56 - 361
Target Start/End: Original strand, 48958074 - 48958382
Alignment:
Q  56 acaccattctgttgcaccgacttcaactccaattcctcggaattgtgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcatt 155  Q
    |||||| ||||||||||| || || || ||||||||||| |  |  ||||| |  ||||||||||||||||| |||||||| |||||||| || ||||||    
T  48958074 acaccactctgttgcaccaacctccaccccaattcctcgcacattagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcatt 48958173  T
Q  156 ggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggccc 255  Q
    ||||| ||||| ||||||||||| || || ||||||| ||||||||| ||||||||| | ||||| |||  ||||||||  |||  ||||||||||||||    
T  48958174 ggaacccccgcgctaacagcctccacagtggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggccc 48958273  T
Q  256 aacccctaatgatcaaacc---cttcttcccgatatttctctcttcaaatcccttcggtaaccacttttctttctctgctttgctctcatcttctttccc 352  Q
    | |||||||||||||||||   |||||| || || ||||||||||| ||||| ||||| ||||||||| |||||||  |||  ||||| |||||||||||    
T  48958274 accccctaatgatcaaacctttcttctttccaatgtttctctcttcgaatcctttcggcaaccactttcctttctcctcttcactctcgtcttctttccc 48958373  T
Q  353 tttcatctc 361  Q
    |||| ||||    
T  48958374 tttcttctc 48958382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 48965204 - 48965555
Alignment:
Q  1 ccttctctatgctatctctgctcactaacttctttctctccgcaacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattg 100  Q
    |||||||||||||||| || ||||| | ||||| ||| ||  ||| |||| ||  |||||||||||||||||| ||||| |||||||| ||||| | ||     
T  48965204 ccttctctatgctatcactactcaccagcttctctctttcttcaaaaccagtcaaacaccattctgttgcaccaacttccactccaatccctcgcacttc 48965303  T
Q  101 tgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaa 200  Q
    |||||| ||||| || ||||||||||| ||||||||    |||||||| ||||| ||||| ||||||| ||||||||| || || |||||||  || |||    
T  48965304 tgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatcggaacccccgcaccaacagcctccactgtggagttccaaccacaa 48965403  T
Q  201 tgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaa 300  Q
    || ||||||||  | ||||| || ||||||||||  |||  ||| || || |||||||||||||| |||||||||||||| || || ||||||||||| |    
T  48965404 tgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaacccctaataatcaaacccttctttccaatgtttctctcttcga 48965503  T
Q  301 atcccttcggtaaccacttttctttctctgctttgctctcatcttctttccc 352  Q
    ||||||| |||||||||||||  |||||  |||  |||||||| ||||||||    
T  48965504 atccctttggtaaccacttttgcttctcctcttcactctcatcctctttccc 48965555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 56 - 355
Target Start/End: Original strand, 48961221 - 48961525
Alignment:
Q  56 acaccattctgttgcaccgacttcaactccaattcctcggaattgtgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcatt 155  Q
    |||||||||||||||||| ||||||| |||||| || || |  |  ||||| |  ||||| ||||||||||| |||||||| || |||||||||||||||    
T  48961221 acaccattctgttgcaccaacttcaattccaataccccgcacatcagttatcaacttctcgttgtagaattgttctccatgtacgggccatgttatcatt 48961320  T
Q  156 ggaactcccgcactaacagcctctacggttgag--ttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggc 253  Q
    || |  || |||||| ||||||| | ||| |||  |||| ||||||||||||||||||  | ||||| || | ||||| ||  ||| |||||||||||||    
T  48961321 gggatccctgcactaccagcctcaatggtggagagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggc 48961420  T
Q  254 ccaacccctaatgatcaaacccttcttcc---cgatatttctctcttcaaatcccttcggtaaccacttttctttctctgctttgctctcatcttctttc 350  Q
    ||| ||| ||||||||||||||||||||    | || ||||||||||||||||| ||||| |||||||| ||||||||  ||| |||||||||  |||||    
T  48961421 ccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcggcaaccacttgtctttctcctcttcgctctcatccactttc 48961520  T
Q  351 ccttt 355  Q
    |||||    
T  48961521 ccttt 48961525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 111 - 328
Target Start/End: Complemental strand, 48912539 - 48912319
Alignment:
Q  111 ttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataa 210  Q
    ||||||||||| || || |||||||| | |||||| || ||||||||||| || |||||||| ||||| || || || |||| ||| ||||| |||||||    
T  48912539 ttctcattgtaaaactgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatgtgtcataa 48912440  T
Q  211 atccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttc---ccgatatttctctcttcaaatccctt 307  Q
    || | ||||| || | ||||||||  ||| |||| ||||| ||||||||| |||| |||| | ||||||||   |||||| ||||||||||||| |||||    
T  48912439 atgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctt 48912340  T
Q  308 cggtaaccacttttctttctc 328  Q
     || ||||| |||||||||||    
T  48912339 tggcaaccatttttctttctc 48912319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 111 - 361
Target Start/End: Original strand, 48974103 - 48974344
Alignment:
Q  111 ttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataa 210  Q
    ||||| ||||||||||| ||  |||| || ||||| || ||||||||||| || |||||||| || || ||||| ||||||| ||||||||| ||||  |    
T  48974103 ttctcgttgtagaattgttcgtcatgcactggccacgtgatcattggaacccctgcactaacggcttccacggtggagttccacccgcaatgtgtcaaga 48974202  T
Q  211 atccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaaatcccttcgg 310  Q
    || | || |  ||||||||||  || |||   |||||||||||||| ||||| |||||||         |||| ||||| ||||||||||||||||| ||    
T  48974203 atgcaccgatagcagggtggcctaaaatcaccacttgtggggcccacccccttatgatca---------tcccaatattcctctcttcaaatccctttgg 48974293  T
Q  311 taaccacttttctttctctgctttgctctcatcttctttccctttcatctc 361  Q
     | ||||||||| |||||  | ||||||||||| |||||||||||| ||||    
T  48974294 catccacttttcgttctcgtcattgctctcatcctctttccctttcttctc 48974344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 114 - 361
Target Start/End: Complemental strand, 6702 - 6452
Alignment:
Q  114 tcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatc 213  Q
    |||||||| ||||| |||||||| |||||||| || ||||| ||||| || |||||||||||||| || || || |||| ||| ||||||||||||||      
T  6702 tcattgtaaaattgttctccatgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacg 6603  T
Q  214 cccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttc---ccgatatttctctcttcaaatcccttcgg 310  Q
    | ||||  ||   ||||||||| ||| |||||||||| |||||||||||||| |||||||||||||||   ||||||||||||||||| |||||||| ||    
T  6602 cacccagagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttgg 6503  T
Q  311 taaccacttttctttctctgctttgctctcatcttctttccctttcatctc 361  Q
     ||||| ||| |||||||  |||  ||||||||||||||||||||| ||||    
T  6502 caaccattttcctttctcctcttcactctcatcttctttccctttcttctc 6452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 111 - 361
Target Start/End: Complemental strand, 10687 - 10434
Alignment:
Q  111 ttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataa 210  Q
    ||||||||||| ||||| |||||||| |  ||||| || ||||||||||| || |||||||| ||||| ||||| || |||| ||| ||||| |||||||    
T  10687 ttctcattgtaaaattgttctccatgcattggccacgtgatcattggaacccctgcactaaccgcctccacggtggaattccacccacaatgtgtcataa 10588  T
Q  211 atccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttc---ccgatatttctctcttcaaatccctt 307  Q
    |  | |||||  ||| |||||| |  ||| |||| || |||||||||||| |||| |||||||||||||||    | |||  ||| ||||||||||| ||    
T  10587 acgcacccacaacagtgtggcttagaatcataacctgaggggcccaacccttaataatcaaacccttcttctttgcaataactctttcttcaaatccttt 10488  T
Q  308 cggtaaccacttttctttctctgctttgctctcatcttctttccctttcatctc 361  Q
    ||||| ||| |||||||||||  |||  |||||||  |||||||||||| ||||    
T  10487 cggtagccatttttctttctcctcttgactctcattctctttccctttcttctc 10434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 1638 - 1580
Alignment:
Q  120 tagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctc 178  Q
    ||||||||||| | ||| || |||||||| |||||||||| ||| ||||||||||||||    
T  1638 tagaattgatcactatgtactggccatgtgatcattggaattcctgcactaacagcctc 1580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 102 - 361
Target Start/End: Complemental strand, 12641684 - 12641422
Alignment:
Q  102 gttataagtttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaat 201  Q
    ||||| || |||||||| ||||| || ||||| || || ||||| || ||||||||||  || |||||||||||||||||    ||||||  ||||||||    
T  12641684 gttatcagcttctcattatagaactgttctccttgcactggccacgtgatcattggaatccctgcactaacagcctctaccaaggagttcgacccgcaat 12641585  T
Q  202 gcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacc---cttcttcccgatatttctctcttc 298  Q
    ||||||| ||| | ||||| |||| |||||| || ||| | ||||||||||||||  |||||||||| |||||   ||| ||  | | ||||||||||||    
T  12641584 gcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggcccactccctaatgataaaacctttcttattttcaacatttctctcttc 12641485  T
Q  299 aaatcccttcggtaaccacttttctttctctgctttgctctcatcttctttccctttcatctc 361  Q
     ||||| || || |||||||||||||||||  |||  |||||||||| |||||||||| ||||    
T  12641484 gaatcctttaggcaaccacttttctttctcctcttcactctcatcttttttccctttcttctc 12641422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 56 - 355
Target Start/End: Complemental strand, 12483716 - 12483411
Alignment:
Q  56 acaccattctgttgcaccgacttcaactccaattcctcggaattgtgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcatt 155  Q
    |||||| ||||||||||||||||| || ||||| ||||| |  |  ||||| |||||||||||||| || || || || ||||||||||| || ||||||    
T  12483716 acaccactctgttgcaccgacttccacaccaatccctcgcacattagttatgagtttctcattgtaaaaatgttcaccgtgaaccggccacgtgatcatt 12483617  T
Q  156 ggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggccc 255  Q
    ||||  || |||||||| || || ||    || ||||  || || || ||||||||| | |||||||||||||||||||| |||   || ||||| ||||    
T  12483616 ggaatccctgcactaaccgcttccacaacagaattccatccacagtgagtcataaatgcacccactgcagggtggctcaaaatcagtacctgtggtgccc 12483517  T
Q  256 aacccctaatgatcaaacccttcttc------ccgatatttctctcttcaaatcccttcggtaaccacttttctttctctgctttgctctcatcttcttt 349  Q
    | ||||| ||||| |||||| ||||       |  || |||||||| |||||||||||||| |||||||||||||||||  | | |||||||||||| ||    
T  12483516 accccctgatgattaaacccatcttattccttctaatgtttctctcctcaaatcccttcggcaaccacttttctttctcctcatcgctctcatcttcctt 12483417  T
Q  350 cccttt 355  Q
    ||||||    
T  12483416 cccttt 12483411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 141 - 281
Target Start/End: Complemental strand, 12590336 - 12590196
Alignment:
Q  141 ggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatct 240  Q
    |||||||| ||||| |||| ||| |||||||| ||||| |||   || ||||  || ||||| ||||||||  | |||||||||  ||||||||  |||     
T  12590336 ggccatgtgatcatcggaattccagcactaaccgcctccacgacggaattccatccacaatgtgtcataaacgcgcccactgcattgtggctcataatca 12590237  T
Q  241 taacttgtggggcccaacccctaatgatcaaacccttcttc 281  Q
    | |||||||||||||||||||||||||||||||||||||||    
T  12590236 ttacttgtggggcccaacccctaatgatcaaacccttcttc 12590196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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