View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11584_high_22 (Length: 343)

Name: NF11584_high_22
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11584_high_22
NF11584_high_22
[»] chr2 (4 HSPs)
chr2 (62-321)||(10725345-10725603)
chr2 (62-304)||(9144872-9145102)
chr2 (62-304)||(27000516-27000758)
chr2 (229-321)||(9493167-9493259)
[»] chr3 (5 HSPs)
chr3 (59-226)||(49119-49285)
chr3 (62-305)||(16004032-16004278)
chr3 (203-325)||(3452825-3452947)
chr3 (258-325)||(49283-49350)
chr3 (15-62)||(49015-49062)
[»] chr6 (3 HSPs)
chr6 (82-322)||(12249846-12250086)
chr6 (62-304)||(34702556-34702800)
chr6 (86-157)||(4017924-4017995)
[»] chr8 (4 HSPs)
chr8 (63-255)||(20137778-20137971)
chr8 (62-205)||(13319158-13319301)
chr8 (216-321)||(13318593-13318698)
chr8 (62-304)||(13333889-13334133)
[»] chr7 (5 HSPs)
chr7 (63-255)||(44354100-44354293)
chr7 (62-321)||(6561723-6561972)
chr7 (83-151)||(4315274-4315342)
chr7 (83-157)||(4264182-4264256)
chr7 (63-109)||(23691283-23691329)
[»] chr4 (2 HSPs)
chr4 (128-304)||(26697406-26697581)
chr4 (83-191)||(40449533-40449641)
[»] chr1 (1 HSPs)
chr1 (84-154)||(34636558-34636628)
[»] chr5 (1 HSPs)
chr5 (64-109)||(35563249-35563294)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 62 - 321
Target Start/End: Complemental strand, 10725603 - 10725345
Alignment:
Q  62 tgaggtgggggatggcgtatgaactttattttggtgggatccttggttaaaaggagggattttgaatgatggatttagtcgtcttttttatctttcagat 161  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||  |||||||| |||||| ||| |||||| || ||||||| |||||||| ||    
T  10725603 tgaggtgggggatggtgtaggaactttattttggtgggatccttggttaggaggagggactttgaaagatagatttaatcatcttttt-atctttcaaat 10725505  T
Q  162 gacaaataggcaactgtggcgaacatgttttctctaggatggggggagggcggagaggcgtggaaatggcgtcgtaggttattggcttaggaggaagaac 261  Q
     |||||| |||||||||| || ||||||||||||| || ||||||||||||||||||| |||||||||  ||||||||||||||||||||||| |||||     
T  10725504 aacaaattggcaactgtgacggacatgttttctctgggctggggggagggcggagaggtgtggaaatgatgtcgtaggttattggcttaggagaaagaat 10725405  T
Q  262 tggggagtgaatgttgtgcgcttttactaacaattgttttgcaagataatgtgaatgaca 321  Q
    || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10725404 tgaggagtgaatgttgtgcgcttttactaacaattgttttgcaggataatgtgaatgaca 10725345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 62 - 304
Target Start/End: Original strand, 9144872 - 9145102
Alignment:
Q  62 tgaggtgggggatggcgtatgaactttattttggtgggatccttggttaaaaggagggattttgaatgatggatttagtcgtcttttttatctttcagat 161  Q
    |||||| ||||||| |  ||||||||||||||||||||||||||||||| | ||||| |||||||| ||| |||| ||||||||||||||||| || | |    
T  9144872 tgaggtaggggatgacaaatgaactttattttggtgggatccttggttagagggaggaattttgaaagatagattcagtcgtcttttttatctctccggt 9144971  T
Q  162 gacaaataggcaactgtggcgaacatgttttctctaggatggggggagggcggagaggcgtggaaatggcgtcgtaggttattggcttaggaggaagaac 261  Q
     ||||||       ||||||  ||||| ||||  |||| | |||||||||||| |||||||||||||||||      |||||| |||| ||||||||||     
T  9144972 aacaaat-------tgtggcacacatggtttcattagg-ttgggggagggcggtgaggcgtggaaatggcg----cagttatttgcttgggaggaagaat 9145059  T
Q  262 tggggagtgaatgttgtgcgcttttactaacaattgttttgca 304  Q
    ||| |||||| |||||||||||||||||| |||||||||||||    
T  9145060 tggagagtgattgttgtgcgcttttactaccaattgttttgca 9145102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 62 - 304
Target Start/End: Original strand, 27000516 - 27000758
Alignment:
Q  62 tgaggtgggggatggcgtatgaactttattttggtgggatccttggttaaaaggagggattttgaatgatggatttagtcgtcttttttatctttcagat 161  Q
    |||||| |||||||| ||   ||||||||||| |||||||||||||||  ||| ||| ||||| || |||  ||||| ||| |||||||||||||| |||    
T  27000516 tgaggttggggatggagtgaaaactttattttagtgggatccttggttggaagaaggaattttaaaggataaatttaatcgccttttttatctttctgat 27000615  T
Q  162 gacaaataggcaactgtggcgaacatgttttctctaggatggggggagggcggagaggcgtggaaatggcgtcgtaggttattggcttaggaggaagaac 261  Q
     |||||| | |||||| |||  |||||||||   ||||||| ||||| || |||||||| ||||||||  || | || || ||||||| ||||||||||     
T  27000616 aacaaattgacaactgaggcagacatgtttttgttaggatgtggggatggaggagaggcttggaaatgttgtaggagattgttggcttgggaggaagaat 27000715  T
Q  262 tggggagtgaatgttgtgcgcttttactaacaattgttttgca 304  Q
    ||||||| |||||||||| ||||||| || | |||||||||||    
T  27000716 tggggagggaatgttgtgagcttttattaccgattgttttgca 27000758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 229 - 321
Target Start/End: Original strand, 9493167 - 9493259
Alignment:
Q  229 ggcgtcgtaggttattggcttaggaggaagaactggggagtgaatgttgtgcgcttttactaacaattgttttgcaagataatgtgaatgaca 321  Q
    ||||||||||||| ||||||| ||||||||||  | |||||||||||||||| || |||||| ||||||||||||| | ||||||||||||||    
T  9493167 ggcgtcgtaggttgttggcttgggaggaagaatcgtggagtgaatgttgtgcactcttactaccaattgttttgcacgctaatgtgaatgaca 9493259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 59 - 226
Target Start/End: Original strand, 49119 - 49285
Alignment:
Q  59 gcttgaggtgggggatggcgtatgaactttattttggtgggatccttggttaaaaggagggattttgaatgatggatttagtcgtcttttttatctttca 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| ||||||||||||||||    
T  49119 gcttgaggtgggggatggcgtatgaactttattttggtgggatccttggttaaaaggagagattttgaaggatagatttagtcatcttttttatctttca 49218  T
Q  159 gatgacaaataggcaactgtggcgaacatgttttctctaggatggggggagggcggagaggcgtggaa 226  Q
    ||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||    
T  49219 gataacaaataggcaactgtggcgaacatgttttctctaggctgggaggagggcgg-gaggcgtggaa 49285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 62 - 305
Target Start/End: Original strand, 16004032 - 16004278
Alignment:
Q  62 tgaggtgggggatggcgtatgaactttattttggtgggatcctt-ggttaaaaggagggattttgaatgatggatttagtcgtctttt--ttatctttca 158  Q
    ||||||||| ||||| | | |||||||||||||||||||||||| ||||| | |||||||||||||| ||| |||| |||||||||||  ||||||||||    
T  16004032 tgaggtgggagatggtgcaagaactttattttggtgggatcctttggttagacggagggattttgaaggatagattaagtcgtcttttttttatctttca 16004131  T
Q  159 gatgacaaataggcaactgtggcgaacatgttttctctaggatggggggagggcggagaggcgtggaaatggcgtcgtaggttattggcttaggaggaag 258  Q
     || | |||  ||||| |||||   ||||||||||| |||| | ||| |||||||| |||||||||||||  || ||||||||| | |||| ||||||||    
T  16004132 aataataaaatggcaaatgtggtagacatgttttctttaggctagggagagggcggtgaggcgtggaaatatcggcgtaggttaatagcttgggaggaag 16004231  T
Q  259 aactggggagtgaatgttgtgcgcttttactaacaattgttttgcaa 305  Q
    || |||| ||||||||||||||| ||||| || ||||||||||||||    
T  16004232 aattgggaagtgaatgttgtgcgtttttattaccaattgttttgcaa 16004278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 203 - 325
Target Start/End: Complemental strand, 3452947 - 3452825
Alignment:
Q  203 gggggagggcggagaggcgtggaaatggcgtcgtaggttattggcttaggaggaagaactggggagtgaatgttgtgcgcttttactaacaattgttttg 302  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| ||| |||||||||| ||| |||||||||| | | | |||||||| |||||||||||    
T  3452947 gggggagggcagagaggcatggaaaaggcgtcgtaggttattgacttgggaggaagaattggagagtgaatgtagcgtgattttactaccaattgttttg 3452848  T
Q  303 caagataatgtgaatgacatgtg 325  Q
    || ||||| ||||||||||||||    
T  3452847 caggataacgtgaatgacatgtg 3452825  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 258 - 325
Target Start/End: Original strand, 49283 - 49350
Alignment:
Q  258 gaactggggagtgaatgttgtgcgcttttactaacaattgttttgcaagataatgtgaatgacatgtg 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  49283 gaactggggagtgaatgttgtgcgcttttactaacaattgttttgcaagataatgttaatgacatgtg 49350  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 49015 - 49062
Alignment:
Q  15 ataggcaatggagggagatcgacgtcggcgtgatggactaatttgctt 62  Q
    |||||||||||||||||||| ||||||| ||||| |||||||||||||    
T  49015 ataggcaatggagggagatcaacgtcggtgtgatagactaatttgctt 49062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 82 - 322
Target Start/End: Original strand, 12249846 - 12250086
Alignment:
Q  82 gaactttattttggtgggatccttggttaaaaggagggattttgaatgatggatttagtcgtctttttt-atctttcagatgacaaataggcaactgtgg 180  Q
    |||||||||||||||||||| |||||||| | ||||| ||| |||| ||| |||| ||||| ||||||| ||||||| ||| ||||||  ||||||||||    
T  12249846 gaactttattttggtgggattcttggttagagggaggaattatgaaggatagattcagtcgcctttttttatctttctgataacaaattagcaactgtgg 12249945  T
Q  181 cgaacatgttttctctaggatggggggagggcggagaggcgtggaaatggcgtcgtaggttattggcttaggaggaagaactggggagtgaatgttgtgc 280  Q
       ||||||||||  ||||||||| | |||| |||||||| ||||||||| ||   |||||  |||||| || ||||||||||||||| ||||||||||     
T  12249946 aagacatgttttcgttaggatgggag-agggaggagaggcttggaaatggtgtaagaggttgatggcttgggtggaagaactggggagggaatgttgtgt 12250044  T
Q  281 gcttttactaacaattgttttgcaagataatgtgaatgacat 322  Q
      ||||| || ||||||||||||| | | || ||||||||||    
T  12250045 tattttattaccaattgttttgcaggctgatatgaatgacat 12250086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 62 - 304
Target Start/End: Original strand, 34702556 - 34702800
Alignment:
Q  62 tgaggtgggggatggcgtatgaactttattttggtgggatccttggttaaaaggagggattttgaatgatggatttagtcgtcttttttatctttcagat 161  Q
    |||||| |||||||| ||   ||||||||||| |||||||||||||||  | | ||| ||||| || |||  ||||| ||| |||||||||||||| |||    
T  34702556 tgaggttggggatggagtgaaaactttattttagtgggatccttggttggacgaaggaattttaaaggataaatttaatcgccttttttatctttctgat 34702655  T
Q  162 gacaaataggcaactgtggcgaacatgttttctctaggatggggggagggcggagaggcgtggaaatggcgtcg--taggttattggcttaggaggaaga 259  Q
     |||||| | |||||| |||  |||||||||   ||||||| ||||| || |||||||| ||||||||  || |   || || ||||||| |||||||||    
T  34702656 aacaaattgacaactgaggcagacatgtttttgttaggatgtggggatggaggagaggcttggaaatgttgtaggagagattgttggcttgggaggaaga 34702755  T
Q  260 actggggagtgaatgttgtgcgcttttactaacaattgttttgca 304  Q
    | ||||||| |||||||||| ||||||| || |||||||||||||    
T  34702756 attggggagggaatgttgtgagcttttattaccaattgttttgca 34702800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 4017924 - 4017995
Alignment:
Q  86 tttattttggtgggatccttggttaaaaggagggattttgaatgatggatttagtcgtcttttttatctttc 157  Q
    |||||||||||| |||||||| || |||| |||| |||||||||||   || ||||||||||||||||||||    
T  4017924 tttattttggtgtgatccttgattgaaagaaggggttttgaatgataagttcagtcgtcttttttatctttc 4017995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 255
Target Start/End: Original strand, 20137778 - 20137971
Alignment:
Q  63 gaggtgggggatggcgtatgaactttattttggtgggatccttggttaaaaggagggattttgaatgatggatttagtcgtcttttttatctttcagatg 162  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||| |  |||| |||||||| ||| ||||||||| || ||||| ||||| ||||     
T  20137778 gaggtgggggaaggcgaatgaactttattttggtgggatccttggttagatagaggtattttgaaggatagatttagtcatc-tttttgtcttttagata 20137876  T
Q  163 acaaataggcaactgtggcgaacatg--ttttctctaggatggggggagggcggagaggcgtggaaatggcgtcgtaggttattggcttaggagg 255  Q
    |||||  |||||||||  || |||||  |||| |||||| | |||||||||||| ||| ||| ||| ||| ||| ||||||  |||||| |||||    
T  20137877 acaaactggcaactgtcacgtacatgtcttttttctaggtttgggggagggcggtgagacgtagaattggtgtcttaggttgatggctttggagg 20137971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 13319301 - 13319158
Alignment:
Q  62 tgaggtgggggatggcgtatgaactttattttggtgggatccttggttaaaaggagggattttgaatgatggatttagtcgtcttttttatctttcagat 161  Q
    ||||||| |||||| ||||  |||||||||||||||||||| ||| ||| | ||| |||||||||||||| || |||||  ||||||||||| |||| ||    
T  13319301 tgaggtgagggatgacgtagaaactttattttggtgggatctttgattagacggaaggattttgaatgatagacttagttatcttttttatccttcaaat 13319202  T
Q  162 gacaaataggcaactgtggcgaacatgttttctctaggatgggg 205  Q
     | |||| ||||||||| ||   |||||||||| |||| |||||    
T  13319201 aataaattggcaactgtagcaggcatgttttctttaggttgggg 13319158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 321
Target Start/End: Complemental strand, 13318698 - 13318593
Alignment:
Q  216 gaggcgtggaaatggcgtcgtaggttattggcttaggaggaagaactggggagtgaatgttgtgcgcttttactaacaattgttttgcaagataatgtga 315  Q
    ||||||||||||||||| ||||||||| ||| || |||||||||| ||| ||||| ||||||||| |||||| || ||||| ||||| | ||| ||||||    
T  13318698 gaggcgtggaaatggcgacgtaggttaatggtttgggaggaagaattggagagtggatgttgtgcacttttattaccaattattttgtaggatgatgtga 13318599  T
Q  316 atgaca 321  Q
     |||||    
T  13318598 ctgaca 13318593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 304
Target Start/End: Original strand, 13333889 - 13334133
Alignment:
Q  62 tgaggtgggggatggcgtatgaactttattttggtgggatccttggttaaaaggagggat-tttgaatgatggatttagtcgtctttttt-atctttcag 159  Q
    ||||| ||||||||| |||  |||||||||||||||||||||||||||  | || ||||| ||||||  ||  ||| ||||   |||||| ||||||| |    
T  13333889 tgaggcgggggatggagtagaaactttattttggtgggatccttggttggaggg-gggatctttgaagcatatattcagtcacatttttttatctttctg 13333987  T
Q  160 atgacaaataggcaactgtggcgaacatgttttctctaggatgggggg-agggcggagaggcgtggaaatggcgtcgtaggttattggcttaggaggaag 258  Q
    |  |||||| | ||||||||| | || |||||  | |||| ||||||| |||| || ||| | ||||||||||   | ||||| || |||| ||| |||     
T  13333988 acaacaaattgacaactgtggaggacttgtttcttttaggttgggggggagggaggcgagacatggaaatggcaaaggaggttgttcgcttgggaagaat 13334087  T
Q  259 aactggggagtgaatgttgtgcgcttttactaacaattgttttgca 304  Q
    || ||||||| ||||||||| | ||||||||| |||||||||||||    
T  13334088 aattggggagggaatgttgtactcttttactaccaattgttttgca 13334133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 255
Target Start/End: Complemental strand, 44354293 - 44354100
Alignment:
Q  63 gaggtgggggatggcgtatgaactttattttggtgggatccttggttaaaaggagggattttgaatgatggatttagtcgtcttttttatctttcagatg 162  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||| |  |||| |||||||| ||| ||||||||| || ||||| ||||| ||||     
T  44354293 gaggtgggggaaggcgaatgaactttattttggtgggatccttggttagatagaggtattttgaaggatagatttagtcatc-tttttgtcttttagata 44354195  T
Q  163 acaaataggcaactgtggcgaacatg--ttttctctaggatggggggagggcggagaggcgtggaaatggcgtcgtaggttattggcttaggagg 255  Q
    |||||  |||||||||  || |||||  |||| |||||| | |||||||||||| ||| ||| ||| ||| ||| ||||||  |||||| |||||    
T  44354194 acaaactggcaactgtcacgtacatgtcttttttctaggtttgggggagggcggtgagacgtagaattggtgtcttaggttgatggctttggagg 44354100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 321
Target Start/End: Complemental strand, 6561972 - 6561723
Alignment:
Q  62 tgaggtgggggatggcgtatgaactttattttggtgggatccttggttaaaaggagggattttgaatgatggatttagtc-gtcttttttatctttcaga 160  Q
    ||||||||||||||| ||  ||||||||||||||||||||| | ||||  | ||||  |||||||| ||| |||| | ||  | ||||||||||||| ||    
T  6561972 tgaggtgggggatggagtgagaactttattttggtgggatcttaggttggagggagaaattttgaaggatagattcaatcatttttttttatctttctga 6561873  T
Q  161 tgacaaataggcaactgtggcgaacatgttttctctaggatggggggagggcggagaggcgtggaaatggcgtcgtaggttattggcttaggaggaagaa 260  Q
    | ||||||  |||||||||||  ||||||||||  ||| ||    |||||| |||||||| ||||||||||       ||| ||||||| ||||||||||    
T  6561872 taacaaattagcaactgtggcagacatgttttcgttagaat----ggagggaggagaggcttggaaatggc-------gttgttggcttgggaggaagaa 6561784  T
Q  261 ctggggagtgaatgttgtgcgcttttactaacaattgttttgcaagataatgtgaatgaca 321  Q
     ||||||| |||| |||||   ||||| || ||||||||||||| ||| || |||||||||    
T  6561783 atggggagagaatattgtgttattttattaccaattgttttgcatgatgatatgaatgaca 6561723  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 4315274 - 4315342
Alignment:
Q  83 aactttattttggtgggatccttggttaaaaggagggattttgaatgatggatttagtcgtctttttta 151  Q
    ||||||||||||||||||||||||||||||  || || |||| ||  || |||| ||||||||||||||    
T  4315274 aactttattttggtgggatccttggttaaagagatgggttttaaagtatagattcagtcgtctttttta 4315342  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 4264256 - 4264182
Alignment:
Q  83 aactttattttggtgggatccttggttaaaaggagggattttgaatgatggatttagtcgtcttttttatctttc 157  Q
    |||||||||||||||||||| ||||||| |  ||||| || | || ||| |||| ||||||||| ||||||||||    
T  4264256 aactttattttggtgggatctttggttagacagaggggttgtaaaggatagattcagtcgtcttatttatctttc 4264182  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 23691329 - 23691283
Alignment:
Q  63 gaggtgggggatggcgtatgaactttattttggtgggatccttggtt 109  Q
    |||||||||||||| |||  ||||||||||| |||||||||||||||    
T  23691329 gaggtgggggatggagtagaaactttattttagtgggatccttggtt 23691283  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 304
Target Start/End: Original strand, 26697406 - 26697581
Alignment:
Q  128 tgatggatttagtcgtcttttttatctttcagatgacaaataggcaactgtggcgaacatgttttctctaggatggggggagggcggagaggcgtggaaa 227  Q
    |||| |||| ||||| |||||||||||||   || |||||| ||| ||| ||||  ||||||||||  ||||||||||| |||| |||||||  ||||||    
T  26697406 tgatagattaagtcgccttttttatctttttaataacaaattggctactatggcagacatgttttcgttaggatggggg-agggtggagaggtttggaaa 26697504  T
Q  228 tggcgtcgtaggttattggcttaggaggaagaactggggagtgaatgttgtgcgcttttactaacaattgttttgca 304  Q
    |||||| | ||||| ||| ||| ||||||| || ||||||| ||||||||||| ||| || || |||||||||||||    
T  26697505 tggcgtaggaggttgttgacttgggaggaataattggggagggaatgttgtgctcttctattaccaattgttttgca 26697581  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 191
Target Start/End: Complemental strand, 40449641 - 40449533
Alignment:
Q  83 aactttattttggtgggatccttggttaaaaggagggattttgaatgatggatttagtcgtcttttttatctttcagatgacaaataggcaactgtggcg 182  Q
    |||||||||||||| ||||| ||| ||  | ||||| |  ||||| ||| |||||||||||| ||||||||||||  |  |||||| ||||||||||||     
T  40449641 aactttattttggtaggatctttgattggagggaggaacattgaaggatagatttagtcgtcctttttatctttcccacaacaaattggcaactgtggca 40449542  T
Q  183 aacatgttt 191  Q
     ||||||||    
T  40449541 tacatgttt 40449533  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 34636628 - 34636558
Alignment:
Q  84 actttattttggtgggatccttggttaaaaggagggattttgaatgatggatttagtcgtcttttttatct 154  Q
    ||||||||||||||||||| ||||||||||| |||| |||||||   | ||| ||||||||||||| ||||    
T  34636628 actttattttggtgggatctttggttaaaagtaggggttttgaagtttagatatagtcgtctttttgatct 34636558  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 35563294 - 35563249
Alignment:
Q  64 aggtgggggatggcgtatgaactttattttggtgggatccttggtt 109  Q
    |||||||| |||  ||||| ||||||||||||||||||||||||||    
T  35563294 aggtggggaatgtagtatgcactttattttggtgggatccttggtt 35563249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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