View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11584_high_25 (Length: 322)

Name: NF11584_high_25
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11584_high_25
NF11584_high_25
[»] chr1 (1 HSPs)
chr1 (13-304)||(52263245-52263536)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 304
Target Start/End: Complemental strand, 52263536 - 52263245
Alignment:
Q  13 caaaggaaaaaggtaataaaagcagagcatcctagctaacataaagtaaaacaaaagcgacaagacattgaatacaagtcataccatgatgtccttgact 112  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52263536 caaaggaaaaaggtaataaaagcagaacatcctagctaacataaagtaaaacaaaagcgacaagacattgaatacaagtcataccatgatgtccttgact 52263437  T
Q  113 agcagcaatatgcaaaggatcaaaaccagatcgattctttttagaaacagtttgaagagttgaatgttttaacaactccttaacaacatcaagatgaccc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52263436 agcagcaatatgcaaaggatcaaaaccagatcgattctttttagaaacagtttgaagagttgaatgtttcaacaactccttaacaacatcaagatgaccc 52263337  T
Q  213 ttttcagcagcagtaaacaaagcagtttcaccaagttcattctcttcattaacaacaagagcacgaacctcagcaatctcagcgttaagatc 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  52263336 ttttcagcagcagtaaacaaagcagtttcaccaagttcattctcttcattcacaacaagagcacgaacttcagcaatctcagcgttaagatc 52263245  T

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