View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11584_high_28 (Length: 278)
Name: NF11584_high_28
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11584_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 14438381 - 14438183
Alignment:
| Q |
1 |
atccaaccacgtataagtagggggctataaaatcagcaaagggaaatcatgaaaaagataaacttgggggattaaaattgcataaaataaactatgaggc |
100 |
Q |
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| T |
14438381 |
atccaaccacgtataagtagggggctttaaaatcagaaaagggaaatcatgaaaaagataaacttgggggattaaaattgcacaaaataaactatggggc |
14438282 |
T |
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| Q |
101 |
caaaattacacatttatgaaagttgaatgctaaaattgcatttaagcctaatatttactcgattgaacttcatgctatgctaaagaaagatttatttgt |
199 |
Q |
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| T |
14438281 |
taaaattacacatttataaaagttgaaggctaaaactgcatttaagcttaatatttactcgattgaacttcatgctatgctaaagaaagatttatttgt |
14438183 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 24428795 - 24428721
Alignment:
| Q |
52 |
aaaaagataaacttgggggattaaaattgcataaaataaactatga-ggccaaaattacacatttatgaaagttg |
125 |
Q |
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|||| ||||||||| || |||||||||||||||||||||| || || |||||||||| ||||| ||| ||||||| |
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| T |
24428795 |
aaaaggataaacttaggagattaaaattgcataaaataaattaggagggccaaaattgcacatatataaaagttg |
24428721 |
T |
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