View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11584_high_35 (Length: 229)
Name: NF11584_high_35
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11584_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 43532282 - 43532060
Alignment:
| Q |
1 |
caactaagcatgggaattacggagctgctaaatgagttcatgaaagtaaaaacactgcaattggatagtgtgagttccaattattatgcagcatatggac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43532282 |
caactaagcatgggaattacggagctgctaaatgagttcatgaaagtaaaaacactgcaattggatagtgtgagttccaattattatgcagcatatggac |
43532183 |
T |
|
| Q |
101 |
ctgaaagtccagtttggatggctgctattacaggaggttgctccatcagttttcttattttcctaatctgtttcaaccacactatagttccatctgaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43532182 |
ctgaaagtccagtttggatggctgctattacaggaggttgctccatcagttttcttattttcctaatctgtttcaaccacactatagttccatctgaaaa |
43532083 |
T |
|
| Q |
201 |
gcattccaaattgtccaaagaaa |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
43532082 |
gcattccaaattgtccaaagaaa |
43532060 |
T |
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