View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11584_high_5 (Length: 626)
Name: NF11584_high_5
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11584_high_5 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 526; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 18 - 621
Target Start/End: Original strand, 51485403 - 51486008
Alignment:
| Q |
18 |
aggttattcatcccatccatgaccagaccttttatctgactcgagagcataagaggaaacttaaggaggagtatggttagtaatgtttattattttcgta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51485403 |
aggttattcatcccatccatgaccagaccttttatctgactcgagagcataagaggaaacttaaggaggagtatggttagtaatgtttattattttcgta |
51485502 |
T |
|
| Q |
118 |
tgttttttgggaagtgggctggtttgatcaattaaattctaccattt-gttgacactttacagtcaccattgacttgtaggaatcgagccttggactttt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51485503 |
tgttttttgggaagtgggctggtttgatcaattaaattctaccattttgttgacactttacagtcaccattgacttgtaggaatcgagccttggactttt |
51485602 |
T |
|
| Q |
217 |
attcagaagctaggagatgctgttttcattcctgccggttgtcctcaccaagtcagaaatctaaaggtgaaatctacatacatgcatggttcgaatttcc |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
51485603 |
attcagaagctaggagatgctgttttcattcctgccggttgtcctcaccaagtcagaaatctaaaggtaaaatctacatacatgcatggttcgaatttcc |
51485702 |
T |
|
| Q |
317 |
ttgttttcctagaaatttattaagactacaaattttctctaggaatgtgattcctaaattttagtacaatatttgtatgtttttctagtcaactctgctg |
416 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51485703 |
ttgttttcctagaaatttattaagattacaaattttctctaggaatgtgattcctaaattttagtacaatatttgtatgtttttctagtcaactctgctg |
51485802 |
T |
|
| Q |
417 |
atatatttcatcctcgtagccacataagcttgaatcagtatggttatcattt-acgtattgagcacatgtcagnnnnnnnnnaaatattaaatgcaatga |
515 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||| |
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| T |
51485803 |
atatatttcatcctcgtagccacataagcttgaatcagtatggttatcatttaacgtattgagcatatgtcagtttttttaaaaatattaaatgcaatga |
51485902 |
T |
|
| Q |
516 |
cnnnnnnnatacaatatcagcatgatgggttgaacatattatttcttgcaaattgttgaggccatttatcacttgcacactttttatgtcccgatttctt |
615 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51485903 |
ctttttttatacaatatcagcatgatgggttgaacatattatttcttgcaaattgttgaggccatttatcacttgcacactttttatgtcccgatttctt |
51486002 |
T |
|
| Q |
616 |
ctctct |
621 |
Q |
| |
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||||| |
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| T |
51486003 |
ttctct |
51486008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 51459046 - 51459307
Alignment:
| Q |
18 |
aggttattcatcccatccatgaccagaccttttatctgactcgagagcataagaggaaacttaaggaggagtatggttagtaatgtttattatt-ttcgt |
116 |
Q |
| |
|
|||||||| | ||||| ||||| |||||| ||||||||||| |||||||||| |||||||||| | |||||||||||||||| ||||| | ||| | |
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| T |
51459046 |
aggttattgaccccattcatgatcagaccatttatctgactatggagcataagatgaaacttaagaaagagtatggttagtaatatttataaacgttcct |
51459145 |
T |
|
| Q |
117 |
atgttttttgggaagtgggctggtttgatcaattaaattctacca-tttgttgacactttacagtcaccattgacttgtaggaatcgagccttggacttt |
215 |
Q |
| |
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|||| |||| | | ||| || ||||||||| |||||| |||| |||||||||| || || ||||||||||||||||| |||||||||||||| |
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| T |
51459146 |
ttgttgtttgtgga-tggactagtttgatcatttaaatggcaccactttgttgacattt------caacattgacttgtaggaattgagccttggacttt |
51459238 |
T |
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| Q |
216 |
tattcagaagctaggagatgctgttttcattcctgccggttgtcctcaccaagtcagaaatctaaaggt |
284 |
Q |
| |
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|||||||||| | |||||||| |||||||||||||| |||| |||||||||||||||||||| ||||| |
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| T |
51459239 |
tattcagaagttgggagatgccgttttcattcctgctggtttgcctcaccaagtcagaaatctgaaggt |
51459307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 186 - 284
Target Start/End: Original strand, 51505689 - 51505787
Alignment:
| Q |
186 |
ttgacttgtaggaatcgagccttggacttttattcagaagctaggagatgctgttttcattcctgccggttgtcctcaccaagtcagaaatctaaaggt |
284 |
Q |
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||||||||||||||| || |||||||||||| | ||||||||||||||||||||||||||||| || |||||||| ||||||||| ||||||| ||||| |
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| T |
51505689 |
ttgacttgtaggaattgaaccttggacttttttccagaagctaggagatgctgttttcattccagctggttgtccgcaccaagtccgaaatctgaaggt |
51505787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 189 - 284
Target Start/End: Complemental strand, 30200725 - 30200630
Alignment:
| Q |
189 |
acttgtaggaatcgagccttggacttttattcagaagctaggagatgctgttttcattcctgccggttgtcctcaccaagtcagaaatctaaaggt |
284 |
Q |
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|||||||||||| || || |||||||| |||||||||| |||||||||||||||||||| || |||||||| ||||||||| ||||||| ||||| |
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| T |
30200725 |
acttgtaggaattgaaccctggactttcgttcagaagctgggagatgctgttttcattccggctggttgtccccaccaagtccgaaatctgaaggt |
30200630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 51505537 - 51505626
Alignment:
| Q |
18 |
aggttattcatcccatccatgaccagaccttttatctgactcgagagcataagaggaaacttaaggaggagtatggttagtaatgtttat |
107 |
Q |
| |
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|||||||||| ||||||||||| ||| ||||||| ||||| |||||||||| || |||||||||||||||||||||| |||||||| |
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| T |
51505537 |
aggttattcaccccatccatgatcagcacttttatttgactatcgagcataagaagaggcttaaggaggagtatggttagttatgtttat |
51505626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 30200891 - 30200803
Alignment:
| Q |
18 |
aggttattcatcccatccatgaccagaccttttatctgactcgagagcataagaggaaacttaaggaggagtatggttagtaatgttta |
106 |
Q |
| |
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||||| |||| ||||||||||| ||||| |||||| ||||| |||||||| | || ||||||||||||||||||||||||| |||| |
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| T |
30200891 |
aggttgttcaccccatccatgatcagacattttatttgactatcgagcataaaaagaggcttaaggaggagtatggttagtaatcttta |
30200803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 184 - 284
Target Start/End: Complemental strand, 135002 - 134902
Alignment:
| Q |
184 |
cattgacttgtaggaatcgagccttggacttttattcagaagctaggagatgctgttttcattcctgccggttgtcctcaccaagtcagaaatctaaagg |
283 |
Q |
| |
|
||||||||||||||||| |||||||||| |||| ||||||||||||||| ||||||||||||||| || |||||||| |||||||| || ||||| |||| |
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| T |
135002 |
cattgacttgtaggaattgagccttggagttttgttcagaagctaggagctgctgttttcattccagctggttgtccccaccaagtgaggaatctgaagg |
134903 |
T |
|
| Q |
284 |
t |
284 |
Q |
| |
|
| |
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|
| T |
134902 |
t |
134902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 20866442 - 20866350
Alignment:
| Q |
192 |
tgtaggaatcgagccttggacttttattcagaagctaggagatgctgttttcattcctgccggttgtcctcaccaagtcagaaatctaaaggt |
284 |
Q |
| |
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||||||||| ||||| |||| |||| ||||||||||||||||||||||||||||||| || |||||||| || |||||||||||||| ||||| |
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| T |
20866442 |
tgtaggaattgagccgtggagttttgttcagaagctaggagatgctgttttcattccagctggttgtccacatcaagtcagaaatctgaaggt |
20866350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 192 - 284
Target Start/End: Original strand, 27400035 - 27400127
Alignment:
| Q |
192 |
tgtaggaatcgagccttggacttttattcagaagctaggagatgctgttttcattcctgccggttgtcctcaccaagtcagaaatctaaaggt |
284 |
Q |
| |
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||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||| || || || || ||||||||| ||||||| ||||| |
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| T |
27400035 |
tgtaggaattgagccttggacttttgttcagaagcttggagatgctgttttcattccagctggctgcccccaccaagtccgaaatctgaaggt |
27400127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 43163096 - 43163177
Alignment:
| Q |
18 |
aggttattcatcccatccatgaccagaccttttatctgactcgagagcataagaggaaacttaaggaggagtatggttagta |
99 |
Q |
| |
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|||||||| | ||||| ||||| |||||| ||||||||||| |||||||||| |||||||||||||||||| |||||||| |
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| T |
43163096 |
aggttattgaccccattcatgatcagaccatttatctgactatggagcataagatgaaacttaaggaggagtaaggttagta |
43163177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 27399864 - 27399945
Alignment:
| Q |
18 |
aggttattcatcccatccatgaccagaccttttatctgactcgagagcataagaggaaacttaaggaggagtatggttagta |
99 |
Q |
| |
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|||||||||| ||||||||||| |||||||||||||| || | |||||||| || |||||||||||||| |||||||| |
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| T |
27399864 |
aggttattcaccccatccatgatcagaccttttatctaaccattgggcataagaaaaagcttaaggaggagtacggttagta |
27399945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 20866609 - 20866514
Alignment:
| Q |
18 |
aggttattcatcccatccatgaccagaccttttatctgactcgagagcataagaggaaacttaaggaggagtatggttagtaatgtttattatttt |
113 |
Q |
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|||||||||| ||||||||||| ||||| |||||||| ||| | ||||||| || ||||| ||||||||||||||||| |||| || ||||| |
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| T |
20866609 |
aggttattcaccccatccatgatcagacgttttatcttactaacaatcataagaagaggcttaaagaggagtatggttagtagtgttcataatttt |
20866514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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