View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11584_high_8 (Length: 546)
Name: NF11584_high_8
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11584_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 19 - 536
Target Start/End: Original strand, 30010203 - 30010717
Alignment:
| Q |
19 |
taaacctacaccataaaattgtacatatattaatgagaatgaaatataagatcaaaattaggtaatgatcataattgaaggataaccaatattttaaaat |
118 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30010203 |
taaacctataccataaaattgtacatatattaatgagaatgaaatataagatcaaaattaggtaatgatcataattgaaggataaccaatattttaaaat |
30010302 |
T |
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| Q |
119 |
tttaaaataaagtcaaaataaaatcattttgatgggatatggagcttataatgtaaaaaatagaaaatannnnnnnnn-----aggtgtgaaccagatat |
213 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| |
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| T |
30010303 |
--------aaagtcaaataaaaatcattttgatgggatatggagcttataatgtaaaaaatagaaaagattttttttttttttaggtgtgaatcagatat |
30010394 |
T |
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| Q |
214 |
cttatgcttgcaattgctgaaactagtcattcgggttagatatgaccgtaatgagattagtcactcgagtcacgtatatccttagcaagcattttacaca |
313 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||| |
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| T |
30010395 |
cttatgcttgcaattgctgaaactagtcattcgagtcagatatgaccgtaatgagactaatcactcgagtcaggtatatccttagcaagcattttacaca |
30010494 |
T |
|
| Q |
314 |
atattttgctctcttaagtgaatgttcatgtttggtgagctttataaagaagatattgattattgagttatagattgtggggttggtgaccaaaaccatt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30010495 |
atattttgctctcttaagtgaatgttcatgtttggtgagctttataaagaagatattgattattgagttatagattgtggggttggtgaccaaaaccatt |
30010594 |
T |
|
| Q |
414 |
ttatgtcacatggttttcctcgacctattgatagtcgacttggttgtttttgttcttactcacaataaacaatcacttcctaactttgttttctggtcca |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30010595 |
ttatgtcacatggttttcctcgacctattgatagtcgacttggttgtttttgttcttactcacaataaacgatcacttcctaactttgttttctggtcca |
30010694 |
T |
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| Q |
514 |
tcgactgcacatgctcaattctt |
536 |
Q |
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||||||||||||||||||||||| |
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| T |
30010695 |
tcgactgcacatgctcaattctt |
30010717 |
T |
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