View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11584_low_1 (Length: 696)
Name: NF11584_low_1
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11584_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 76 - 414
Target Start/End: Original strand, 44853421 - 44853758
Alignment:
| Q |
76 |
cacactgacacgtacacgcagacacaaccctaaaacgtcaacagtgataattatttaaagggaaatgctaacaagtgccccgggcactggttagcaagaa |
175 |
Q |
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| T |
44853421 |
cacactgacacgtacacgcagacacaaccctaaaacgtcaacacttataattatttaaagggaaatgctaacaagtgccccgggcaccggttagcaagaa |
44853520 |
T |
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| Q |
176 |
cctttnnnnnnntatacatacaattgaatataattcacatttggacactgacacgtgtcaaacatcgaacacattttcaatcagaagtgtcgggtgtaac |
275 |
Q |
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| T |
44853521 |
cctttaaaaaaatatacatacaattgaatataattcacatttggacactgacatgtgtcaaacatcgaacacattttcaatcagaagtgtcgg-tgtaac |
44853619 |
T |
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| Q |
276 |
cgagcttaacgacactccattggcctcaccttttataatttgttacagcaacacccttgatgtatacagcaccagccatacctaacacagtcacaatcat |
375 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44853620 |
cgagcttaacgacactccattggcctcaccttttatactttgttacagcaacacccttgatgtatacagcaccagccatacctaacacagtcacaatcat |
44853719 |
T |
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| Q |
376 |
aaatcgtaagaaactcgtaagctagggtttcaaaaggta |
414 |
Q |
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| T |
44853720 |
aaatcgtaagaaactcgtaagctagggtttcaaaaggta |
44853758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 443 - 678
Target Start/End: Original strand, 44853803 - 44854038
Alignment:
| Q |
443 |
taccgaattgaaaggaaggaaaaggaggagaatcaagctgaagccacatattcttccccttccggcgagctgcaacaatcttcttcccaacaacggaagc |
542 |
Q |
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| T |
44853803 |
taccgaattgaaaggaaggaaaaggaggagaatcaagctgaagccacatattcttccccttccggcgagctgcaacaatcttcttcccaacaacggaagc |
44853902 |
T |
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| Q |
543 |
ttcgaactcttcgcgagagacaccgtcgatgactttgttatcatcggcaacgatgcatttggttatcttctttccgatacagttctcttccgccgctctt |
642 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44853903 |
ttcgaactcttcgcgagagacaccgtcgatgactttgttatcatcggcgacgatgcatttggttatcttctttccgatacagttctcttccaccgctctt |
44854002 |
T |
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| Q |
643 |
ctcgccgcctctacctccggtagctccggcattatg |
678 |
Q |
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| T |
44854003 |
ctcgccgcctctacctccggtagctccggcattatg |
44854038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 44853308 - 44853370
Alignment:
| Q |
11 |
cagagagtctatatcattgaattttttaaaacttgagtataacgtgtgaagtagagattagct |
73 |
Q |
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| T |
44853308 |
cagagagtctatatcattgaattttttaaaacttgagtataacgtgtgaagtagagattagct |
44853370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 3026198 - 3026160
Alignment:
| Q |
130 |
ttaaagggaaatgctaacaagtgccccgggcactggtta |
168 |
Q |
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| T |
3026198 |
ttaaagggaaatgctaactggtgccccgggcactggtta |
3026160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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