View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11584_low_10 (Length: 503)
Name: NF11584_low_10
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11584_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 15059530 - 15059330
Alignment:
| Q |
19 |
aatcagtcccataaaaaataagccaagacaacnnnnnnn--cttgtataaaatatcaatgataaattgtgagtttggtccctaacctttaaaa-ttaaaa |
115 |
Q |
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| T |
15059530 |
aatcagtcccataaaaaataagccaaaacaaaaaaaaaaagcttgtataaaatatcaatggtaaattgtaagtttggccccaagcctttaaaaattaaaa |
15059431 |
T |
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| Q |
116 |
aggaa-tatcaataacaaattt-taagtggcaacaatagtca---atgcttgcacattatataataacctataaatgagtaattgaagtagaaatgagtt |
210 |
Q |
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| T |
15059430 |
agaaaatatcaataacaaatttataagtggtaaaaataatcattaatgcttgcacattatataataacatgtaaatgagtaattgaagtagcaatgagtt |
15059331 |
T |
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| Q |
211 |
t |
211 |
Q |
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| |
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| T |
15059330 |
t |
15059330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 398
Target Start/End: Complemental strand, 15059156 - 15059062
Alignment:
| Q |
303 |
ataaagaatgagagtaagaaaagcactactagaaagattgaaataatgacgagtaaggggagtagagatgagtgtaaaaaactactactaagaaaa |
398 |
Q |
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| T |
15059156 |
ataaataatgagagtaagaaaataaatactagaaaatttgaaataatggtaagtaaggggag-agagatgggaataaaaaagtactaccaagaaaa |
15059062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 136 - 211
Target Start/End: Original strand, 30859459 - 30859534
Alignment:
| Q |
136 |
ttaagtggcaacaatagtcaatgcttgcacattatataataacctataaatgagtaattgaagtagaaatgagttt |
211 |
Q |
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| T |
30859459 |
ttaagtggcaacaataatcaatgcttgctcattacataataacctataaatgagtaattgaagtagaaatgagttt |
30859534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 30859418 - 30859457
Alignment:
| Q |
70 |
atcaatgataaattgtgagtttggtccctaacctttaaaa |
109 |
Q |
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| T |
30859418 |
atcaatgataaattgtgagtttggtcccaaaactttaaaa |
30859457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 30855020 - 30855056
Alignment:
| Q |
144 |
caacaatagtcaatgcttgcacattatataataacct |
180 |
Q |
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| T |
30855020 |
caacaataatcaatgcttgcacattatttaataacct |
30855056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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