View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11584_low_11 (Length: 434)
Name: NF11584_low_11
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11584_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 28 - 427
Target Start/End: Complemental strand, 42316339 - 42315933
Alignment:
| Q |
28 |
atgtttatatgggcacattagtgccactaagaatcata------actgatataagatgttatcattgtaatgtattttagtcaagtcaagaccctacctt |
121 |
Q |
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| T |
42316339 |
atgtttatatgggcacattaatgccaccaagaatcatatccagaactgata--agatgttatcattgtaatgtattttagtcaagtcaagaccctacctt |
42316242 |
T |
|
| Q |
122 |
catattcaatttaggcctatatataactttgttcatataagatgttagagatcatttctaacannnnnnnnnnnn---actgaaaaacttgtaacannnn |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42316241 |
catattcaatttaggcctatatataactttgttcatataagatgttagagatcatttctaacatttgtttttttttttactgaaaaacttgtaacatttt |
42316142 |
T |
|
| Q |
219 |
nnnnnacttgagcttcactgcaatagtactcataactctatgctttccatttgaccacaataattccccaaaaacataatccattgtagcatcaccattt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42316141 |
tttttacttgagcttcactgcaatagtactcataactctatgctttccatttgaccacaataattccccaaaaacataatccattgtagcatcaccattt |
42316042 |
T |
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| Q |
319 |
tccattgctttcatcacaataaccttgaatgatttcttctcaccaacttccttaaagctcaagtaacttggctcaatcgaaactgaaactccatcaggtg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42316041 |
tccattgctttcatcacaataaccttgaatgatttcttttcaccaacttccttaaagctcaagtaacttggctcaatcgaaactgaaactccatcaggcg |
42315942 |
T |
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| Q |
419 |
cctttgctt |
427 |
Q |
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|||| |||| |
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| T |
42315941 |
ccttggctt |
42315933 |
T |
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