View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11584_low_13 (Length: 403)
Name: NF11584_low_13
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11584_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 25357388 - 25357765
Alignment:
| Q |
18 |
aaccaagacttccttaacccacttagacctggaactattgaaatttaacaccattccacaagtatgcatcggacgtagtgacctcacccaaaatgtatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25357388 |
aaccaagacttccttaacccacttagacctggaactattgaaatttaacaccattccacaagtatgcatcggacgtagtgacctcacccaaaatgtatta |
25357487 |
T |
|
| Q |
118 |
gtctttttcgctgtactcgcaaaaacattgtatgcacatttttggttgaaccaacagacagctctaacattctttttgccattcctggtaaattttattt |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25357488 |
gtctttttcgctgtacttgcaaaaacattgtatgcacatttttggttgaaccaacaaacagctctaacattccttttgccattcctggtaaattttattt |
25357587 |
T |
|
| Q |
218 |
ttctgccatttaatacattgagctctcgaacagcgcccttaaattggtgtcgagaagtaaactccattccgatactgaatttgaagtctttggtgatttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25357588 |
ttctgccatttaatacattgagctctcgaacaacgtccttaaattggtgtcgagaagtaaactccattccgatactgaatttgaagtctttggtgatttc |
25357687 |
T |
|
| Q |
318 |
agcttctgtatagaacttatcatattttggcttacccttcgtttcagaatcttccttagatgcattgtccaattcatt |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25357688 |
agcttctgtatagaacttatcatattttggcttacccttcgtttcagaatcttccttagatgcattgtccaattcatt |
25357765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 25352714 - 25353091
Alignment:
| Q |
18 |
aaccaagacttccttaacccacttagacctggaactattgaaatttaacaccattccacaagtatgcatcggacgtagtgacctcacccaaaatgtatta |
117 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| |||||| |||||| | |
|
|
| T |
25352714 |
aaccaagactttcgcaacccacttagacctggaactcttgaaatttaacaccattccacaagtatgcatcgggcatagtgacgtcaccctaaatgtttcc |
25352813 |
T |
|
| Q |
118 |
gtctttttcgctgtactcgcaaaaacattgtatgcacatttttggttgaaccaacagacagctctaacattctttttgccattcctggtaaattttattt |
217 |
Q |
| |
|
| || || || | ||| || ||| |||||| ||||||||||||||||| ||| |||||| |||| || |||| || || ||| ||||||||||| |
|
|
| T |
25352814 |
ttgcttctcactattctcacattaactttgtatccacatttttggttgaacttacaaacagctttaaccctccttttctcaatcttggcaaattttattt |
25352913 |
T |
|
| Q |
218 |
ttctgccatttaatacattgagctctcgaacagcgcccttaaattggtgtcgagaagtaaactccattccgatactgaatttgaagtctttggtgatttc |
317 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| || ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25352914 |
ttctgccatttaatacatcgtgctctcgaacaacgtccttaaactggtgtcgagaagtaaactccattccaatactgaatttgaagtctttggtgatttc |
25353013 |
T |
|
| Q |
318 |
agcttctgtatagaacttatcatattttggcttacccttcgtttcagaatcttccttagatgcattgtccaattcatt |
395 |
Q |
| |
|
|||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25353014 |
agctcctgcattgaacttatcatattttggcttacccttcgtttcagaatcttccttagatgctttgtccaattcatt |
25353091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 131 - 347
Target Start/End: Original strand, 25362179 - 25362395
Alignment:
| Q |
131 |
tactcgcaaaaacattgtatgcacatttttggttgaaccaacagacagctctaacattctttttgccattcctggtaaattttatttttctgccatttaa |
230 |
Q |
| |
|
||||| |||||| | ||||| ||||||||| ||| ||| ||| ||||||||||| ||| |||| | ||| |||||||||||| | |||| |||||| |
|
|
| T |
25362179 |
tactcacaaaaatagtgtatccacattttttgttaaacttacaaacagctctaaccttccatttgtcgttctcggtaaattttatctctctgttatttaa |
25362278 |
T |
|
| Q |
231 |
tacattgagctctcgaacagcgcccttaaattggtgtcgagaagtaaactccattccgatactgaatttgaagtctttggtgatttcagcttctgtatag |
330 |
Q |
| |
|
|||||| ||||| ||||| | |||||||| | ||| |||||| |||||||||||||||||||||||| ||||||||||||||||| | |||| || | |
|
|
| T |
25362279 |
cacattgtgctcttgaacaacatccttaaatagttgtagagaagaaaactccattccgatactgaatttaaagtctttggtgatttctgtttctacattg |
25362378 |
T |
|
| Q |
331 |
aacttatcatattttgg |
347 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
25362379 |
aacttatcatattttgg |
25362395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University