View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11584_low_16 (Length: 393)
Name: NF11584_low_16
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11584_low_16 |
 | |
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| [»] scaffold0536 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: scaffold0536 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 12 - 393
Target Start/End: Complemental strand, 10906 - 10524
Alignment:
| Q |
12 |
tgagatgaaccaccttcctgagccgcacatttagccttatccccaaactctcgagcatgtcgtctgattatctcagctacataactattgtccatcaatc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10906 |
tgagatgaaccaccttcctgagccgcacatttagccttatccccaaactctcgagcatgtcgtctgattatctcagctacataactattgtccatcaatc |
10807 |
T |
|
| Q |
112 |
tcttcacaaccttctcaataccatccctcccgaccaacttctctttctccccaataccaactaagcaccactctactgcacccactt-cccctcaatccc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
10806 |
tcttcacaaccttctcaataccatccctcccgaccaacttctctttctccccaataccaactaagcaccactctactgcacccacttcccccccaatccc |
10707 |
T |
|
| Q |
211 |
ccgcacttgcgttatcaacttctcattgtaaaattgttctccatgcactggtcacgtgatcattggaacccctacactaatcgcctccatggtggaattc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||| |||||||| |||||||||| |
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|
| T |
10706 |
ccgcacttgcgttatcaacttctcattgtaaaattgttctccatgcattggccacgtgatcattggaacccctgcactaaccgcctccacggtggaattc |
10607 |
T |
|
| Q |
311 |
cacccacaatgtgtcataaacgcacccacagcagtgtggcttagaatcataacctgaggggcccaacccctaataatcaaacc |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
10606 |
cacccacaatgtgtcataaacgcacccacaacagtgtggcttagaatcataacctgaggggcccaacccttaataatcaaacc |
10524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 12 - 393
Target Start/End: Complemental strand, 6924 - 6542
Alignment:
| Q |
12 |
tgagatgaaccaccttcctgagccgcacatttagccttatccccaaactctcgagcatgtcgtctgattatctcagctacataactattgtccatcaatc |
111 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| | ||||| |||||||| | | || | |||||||||| |
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|
| T |
6924 |
tgagatgaaccaccttcttgagccgcatgtttagccttatccccaaactctcgagcatactttttgattttctcagcttcgtcaccaccatccatcaatc |
6825 |
T |
|
| Q |
112 |
tcttcacaaccttctcaataccatccctcccgaccaacttctctttctccccaataccaactaagcaccactctactgcacccacttcc-cctcaatccc |
210 |
Q |
| |
|
|| ||||| |||||||||||| ||||||||| |||| ||||||| |||||||||||||| | | | |||||| |||| ||||| || || |||| | |
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|
| T |
6824 |
tcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccaccaccccaattcg |
6725 |
T |
|
| Q |
211 |
ccgcacttgcgttatcaacttctcattgtaaaattgttctccatgcactggtcacgtgatcattggaacccctacactaatcgcctccatggtggaattc |
310 |
Q |
| |
|
||||| || ||||||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||| |||||| ||||| | ||||||||| |
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|
| T |
6724 |
tcgcacctgtgttatcaacttttcattgtaaaattgttctccatgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattc |
6625 |
T |
|
| Q |
311 |
cacccacaatgtgtcataaacgcacccacagcagtgtggcttagaatcataacctgaggggcccaacccctaataatcaaacc |
393 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| ||||||| | ||||||||| || || ||||||||||||||||||||||| |
|
|
| T |
6624 |
cacccacaatgcgtcataaacgcacccagagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacc |
6542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 7 - 389
Target Start/End: Complemental strand, 48912763 - 48912380
Alignment:
| Q |
7 |
tcgagtgagatgaaccaccttcctgagccgcacatttagccttatccccaaactctcgagcatgtcgtctgattatctcagctacataactattgtccat |
106 |
Q |
| |
|
|||| ||||||||||||||||| | | ||| |||||| || ||||||||||||||||||||| |||||||| |||||||| ||| || | ||||||| |
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|
| T |
48912763 |
tcgaatgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccat |
48912664 |
T |
|
| Q |
107 |
caatctcttcacaaccttctcaataccatccctcccgaccaacttctctttctccccaataccaactaagcaccactctactgcacccacttcc-cctca |
205 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| |||| ||||||| | |||||||||||| | || ||| || |||||| || ||| || || |
|
|
| T |
48912663 |
caatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccacccca |
48912564 |
T |
|
| Q |
206 |
atcccccgcacttgcgttatcaacttctcattgtaaaattgttctccatgcactggtcacgtgatcattggaacccctacactaatcgcctccatggtgg |
305 |
Q |
| |
|
||||| |||| || ||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||| |||||| ||||| | |||| |
|
|
| T |
48912563 |
atcccatgcacctgtgttatcaacttctcattgtaaaactgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtgg |
48912464 |
T |
|
| Q |
306 |
aattccacccacaatgtgtcataaacgcacccacagcagtgtggcttagaatcataacctgaggggcccaacccctaataatca |
389 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| || |||||||| |||||||||||||| || ||||||||| ||||||||| |
|
|
| T |
48912463 |
aattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatca |
48912380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 221 - 393
Target Start/End: Original strand, 48958120 - 48958292
Alignment:
| Q |
221 |
gttatcaacttctcattgtaaaattgttctccatgcactggtcacgtgatcattggaacccctacactaatcgcctccatggtggaattccacccacaat |
320 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| | |||| ||||||| ||||| |||||||| |||| |
|
|
| T |
48958120 |
gttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcgctaacagcctccacagtggagttccacccgcaat |
48958219 |
T |
|
| Q |
321 |
gtgtcataaacgcacccacagcagtgtggcttagaatcataacctgaggggcccaacccctaataatcaaacc |
393 |
Q |
| |
|
|||||||||| |||||||| ||| ||||||| ||||||| ||| || |||||||| |||||||| |||||||| |
|
|
| T |
48958220 |
gtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatcaaacc |
48958292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 43 - 393
Target Start/End: Original strand, 48965126 - 48965477
Alignment:
| Q |
43 |
tagccttatccccaaactctcgagcatgtcgtctgattatctcagctacataactattgtccatcaatctcttcacaaccttctcaataccatccctccc |
142 |
Q |
| |
|
||||||| || ||||||||| ||||| | | ||| ||| |||||||| ||| || | |||||||||||||| ||||| ||||||| || | ||| || | |
|
|
| T |
48965126 |
tagccttttctccaaactcttgagcacgacttctaattttctcagcttcatcaccactgtccatcaatctcctcacagccttctctatgctatcactact |
48965225 |
T |
|
| Q |
143 |
gaccaacttctctttctccccaataccaactaagcaccactctactgcacccacttcccctc-aatcccccgcacttgcgttatcaacttctcattgtaa |
241 |
Q |
| |
|
|||| ||||||| | || ||| |||| || ||||| ||| |||||| |||||| ||| |||||| ||||||| ||||||| || || ||||| |
|
|
| T |
48965226 |
caccagcttctctctttcttcaaaaccagtcaaacaccattctgttgcaccaacttccactccaatccctcgcacttctgttatcagtttttcgttgtag |
48965325 |
T |
|
| Q |
242 |
aattgttctccatgcactggtcacgtgatcattggaacccctacactaatcgcctccatggtggaattccacccacaatgtgtcataaacgcacccacag |
341 |
Q |
| |
|
|||||||||||||| || || || ||||| |||||||| ||| || ||||||| ||||| ||||| |||||||| |||||||| |||||||||| |
|
|
| T |
48965326 |
aattgttctccatgtgaaggccatgtaatcatcggaacccccgcaccaacagcctccactgtggagttccaaccacaatgagtcataaaggcacccacag |
48965425 |
T |
|
| Q |
342 |
cagtgtggcttagaatcataacctgaggggcccaacccctaataatcaaacc |
393 |
Q |
| |
|
| | |||||| ||||||| |||||| || ||||||||||||||||||||||| |
|
|
| T |
48965426 |
cggggtggctcagaatcagaacctgcggagcccaacccctaataatcaaacc |
48965477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 204 - 381
Target Start/End: Original strand, 48974077 - 48974254
Alignment:
| Q |
204 |
caatcccccgcacttgcgttatcaacttctcattgtaaaattgttctccatgcactggtcacgtgatcattggaacccctacactaatcgcctccatggt |
303 |
Q |
| |
|
|||| |||||||| || |||||||||||||| ||||| |||||||| |||||||||| ||||||||||||||||||||| |||||| || |||| ||| |
|
|
| T |
48974077 |
caataccccgcacctgagttatcaacttctcgttgtagaattgttcgtcatgcactggccacgtgatcattggaacccctgcactaacggcttccacggt |
48974176 |
T |
|
| Q |
304 |
ggaattccacccacaatgtgtcataaacgcacccacagcagtgtggcttagaatcataacctgaggggcccaacccct |
381 |
Q |
| |
|
||| |||||||| |||||||||| || ||||| | ||||| ||||| || ||||| || || |||||||| ||||| |
|
|
| T |
48974177 |
ggagttccacccgcaatgtgtcaagaatgcaccgatagcagggtggcctaaaatcaccacttgtggggcccaccccct |
48974254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 204 - 393
Target Start/End: Original strand, 48961250 - 48961441
Alignment:
| Q |
204 |
caatcccccgcacttgcgttatcaacttctcattgtaaaattgttctccatgcactggtcacgtgatcattggaacccctacactaatcgcctccatggt |
303 |
Q |
| |
|
|||| |||||||| | |||||||||||||| ||||| |||||||||||||| || || || || |||||||| | |||| ||||| ||||| ||||| |
|
|
| T |
48961250 |
caataccccgcacatcagttatcaacttctcgttgtagaattgttctccatgtacgggccatgttatcattgggatccctgcactaccagcctcaatggt |
48961349 |
T |
|
| Q |
304 |
g--gaattccacccacaatgtgtcataaacgcacccacagcagtgtggcttagaatcataacctgaggggcccaacccctaataatcaaacc |
393 |
Q |
| |
|
| || |||||||| ||||| ||||||||| ||||||| || ||||||| || |||||||| || |||||||| ||| |||| |||||||| |
|
|
| T |
48961350 |
ggagagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacc |
48961441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 206 - 333
Target Start/End: Original strand, 48951204 - 48951331
Alignment:
| Q |
206 |
atcccccgcacttgcgttatcaacttctcattgtaaaattgttctccatgcactggtcacgtgatcattggaacccctacactaatcgcctccatggtgg |
305 |
Q |
| |
|
||||| ||||| || ||||| | |||||||||||| || || || | |||||| || ||||||||||| ||||||||||||||||| |||||| | | |
|
|
| T |
48951204 |
atcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctccgtcacag |
48951303 |
T |
|
| Q |
306 |
aattccacccacaatgtgtcataaacgc |
333 |
Q |
| |
|
| ||||||||||||||||||| |||||| |
|
|
| T |
48951304 |
agttccacccacaatgtgtcaaaaacgc |
48951331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 221 - 393
Target Start/End: Complemental strand, 12590375 - 12590203
Alignment:
| Q |
221 |
gttatcaacttctcattgtaaaattgttctccatgcactggtcacgtgatcattggaacccctacactaatcgcctccatggtggaattccacccacaat |
320 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| || ||| || |||||||| |||| || |||||| |||||||| | ||||||||| ||||||| |
|
|
| T |
12590375 |
gttatcaacttctcattgtaaaaatgttcaccattcaatggccatgtgatcatcggaattccagcactaaccgcctccacgacggaattccatccacaat |
12590276 |
T |
|
| Q |
321 |
gtgtcataaacgcacccacagcagtgtggcttagaatcataacctgaggggcccaacccctaataatcaaacc |
393 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||| | |||||| || || ||||||||||||||||| |||||||| |
|
|
| T |
12590275 |
gtgtcataaacgcgcccactgcattgtggctcataatcattacttgtggggcccaacccctaatgatcaaacc |
12590203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 381
Target Start/End: Complemental strand, 12483661 - 12483510
Alignment:
| Q |
230 |
ttctcattgtaaaattgttctccatgcactggtcacgtgatcattggaacccctacactaatcgcctccatggtggaattccacccacaatgtgtcataa |
329 |
Q |
| |
|
|||||||||||||| ||||| || || || || |||||||||||||||| |||| |||||| ||| |||| |||||||| ||||| || ||||||| |
|
|
| T |
12483661 |
ttctcattgtaaaaatgttcaccgtgaaccggccacgtgatcattggaatccctgcactaaccgcttccacaacagaattccatccacagtgagtcataa |
12483562 |
T |
|
| Q |
330 |
acgcacccacagcagtgtggcttagaatcataacctgaggggcccaacccct |
381 |
Q |
| |
|
| |||||||| |||| |||||| | ||||| ||||| || ||||| ||||| |
|
|
| T |
12483561 |
atgcacccactgcagggtggctcaaaatcagtacctgtggtgcccaccccct |
12483510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 221 - 393
Target Start/End: Complemental strand, 12641684 - 12641512
Alignment:
| Q |
221 |
gttatcaacttctcattgtaaaattgttctccatgcactggtcacgtgatcattggaacccctacactaatcgcctccatggtggaattccacccacaat |
320 |
Q |
| |
|
||||||| ||||||||| || || |||||||| |||||||| |||||||||||||||| |||| |||||| ||||| | ||| ||| |||| |||| |
|
|
| T |
12641684 |
gttatcagcttctcattatagaactgttctccttgcactggccacgtgatcattggaatccctgcactaacagcctctaccaaggagttcgacccgcaat |
12641585 |
T |
|
| Q |
321 |
gtgtcataaacgcacccacagcagtgtggcttagaatcataacctgaggggcccaacccctaataatcaaacc |
393 |
Q |
| |
|
| ||||| || ||||||||||||| |||||||| |||||| || || |||||||| ||||||| || ||||| |
|
|
| T |
12641584 |
gcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggcccactccctaatgataaaacc |
12641512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 221 - 393
Target Start/End: Original strand, 13448339 - 13448511
Alignment:
| Q |
221 |
gttatcaacttctcattgtaaaattgttctccatgcactggtcacgtgatcattggaacccctacactaatcgcctccatggtggaattccacccacaat |
320 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||| || || ||||| ||||||||||| || |||||| ||||| | ||| || |||| ||| |||| |
|
|
| T |
13448339 |
gttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaat |
13448438 |
T |
|
| Q |
321 |
gtgtcataaacgcacccacagcagtgtggcttagaatcataacctgaggggcccaacccctaataatcaaacc |
393 |
Q |
| |
|
| |||||||| | ||||| |||| |||||| | ||| ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
13448439 |
gcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacc |
13448511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 313 - 393
Target Start/End: Original strand, 12540753 - 12540833
Alignment:
| Q |
313 |
cccacaatgtgtcataaacgcacccacagcagtgtggcttagaatcataacctgaggggcccaacccctaataatcaaacc |
393 |
Q |
| |
|
|||||||||||||||||| | ||||| |||| |||||| | ||| ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
12540753 |
cccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacc |
12540833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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