View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11584_low_18 (Length: 370)
Name: NF11584_low_18
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11584_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 43532326 - 43532685
Alignment:
| Q |
1 |
tcgcttgatcggttgagtagcagatgtgtgattgaatgcaacagacaaacgtcttgtgccctcttaatgacatgtacaagttgtatccttgatggaaatt |
100 |
Q |
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| T |
43532326 |
tcgcttgatcggttgagtagcagatgtgtgattgaatgcaacagacaaacatcttgtgccctcttaatgacatgtacaagttgtatccttgatggaaatt |
43532425 |
T |
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| Q |
101 |
tatttttgttggtaattgaatcaatttctgttaaaatgctcagaaatggagttattccactacctccagcaaccataatcacactgtcatgtctgcaaac |
200 |
Q |
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| T |
43532426 |
tatttttgttggtaattgaatcaatttctgttaaaatgctcagaaatggagttattccactacctccagcaaccataatcacactgtcatgtctgcaaac |
43532525 |
T |
|
| Q |
201 |
aaattttttcgttattctcatttatcttataaaaagtagtatattagaagcatttggatattggtgtaatgtttatgcttactttaaatagtctaatgac |
300 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43532526 |
aaattttttccttattctcatttatcttataaaaagtagtatattagaagcatttggatattggtgtaatgtttatgcttactttaaatagtctaatgaa |
43532625 |
T |
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| Q |
301 |
gcaggttcatagggtccttcaattgcaacaggtatacccttccttttatcagcacctttg |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43532626 |
gcaggttcatagggtccttcaattgcaacaggtatacctttccttttatcagcacctttg |
43532685 |
T |
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