View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11584_low_2 (Length: 656)
Name: NF11584_low_2
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11584_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 20 - 473
Target Start/End: Original strand, 4004599 - 4005048
Alignment:
| Q |
20 |
gtcttgaacatgtaattttaattgacattgtatataaactgtgatgtttgatatttgaccattagtgcatttcatatttatttcaatatttgaagtctct |
119 |
Q |
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| T |
4004599 |
gtcttgaacatgtaattttaattgacattgtatataaactgtgatgtttgatatttgaccattagtgcatttcatatttatttcaatatttgaagtctct |
4004698 |
T |
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| Q |
120 |
ccttnnnnnnnnnnnnntcaattcaattcagtggatcatatgatttgtttctaatggatggatggttacaaaataaaactgaaggaaatcatatcatatt |
219 |
Q |
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| T |
4004699 |
ccttaaaaaaccaaaaatcaattcaattcagtggatcatatgatttgtttctaatggatgg----tcacaaaataaaactgaaggaaatcatatcatatt |
4004794 |
T |
|
| Q |
220 |
attttaactgaaggaaaccacgtttcatttgaagtctttaccactaccattgtcaccaaacactctccaccaccacagcactattgctcctcttcactat |
319 |
Q |
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| T |
4004795 |
attttaactgaaggaaactacgtttcatttgaagtctttaccactaccattgtcaccaaacactctccaccaccacagcactattgctcctcttcactat |
4004894 |
T |
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| Q |
320 |
ctacttctattgtattctaatttctatgtatgtttgccatgatttggttgaaacatcaaagtgtaatttttgcaaaattatgatagctcgttgtacttcc |
419 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
4004895 |
ctacttctattgcattctcatttctatgtatgtttgccatgatttggttgaaacttcaaagtgtaatttttgcaaaattatgatagctccttgtgcttcc |
4004994 |
T |
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| Q |
420 |
atagatccaaacatgcacttggacactctaccattgtcaccaaacaccctccac |
473 |
Q |
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| T |
4004995 |
atagatccaaacatgcacttggacactctaccattgtcaccaaacaccctccac |
4005048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 506 - 639
Target Start/End: Original strand, 4006151 - 4006286
Alignment:
| Q |
506 |
ctatcacattaaaaaattatcaacatatttgttttcccgtcagttataaacatattgaaattaatacaatcacatacacacaaaac-agt--nnnnnnnn |
602 |
Q |
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| T |
4006151 |
ctatcacattaaaaaattatcaacatatttgttttcc-gtcagttataaacatattgaaattagtacaatcatatacacacaaaacaagtaaaaaaaaaa |
4006249 |
T |
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| Q |
603 |
nctgcattcaaacatgacctgctcgaattcctacaca |
639 |
Q |
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| T |
4006250 |
actgcattcaaacatgacctgctcgaattcctacaca |
4006286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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