View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11584_low_20 (Length: 358)
Name: NF11584_low_20
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11584_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 54 - 341
Target Start/End: Original strand, 1450703 - 1450991
Alignment:
| Q |
54 |
ttaacaaagtcattcttcctaataggtactcttttcttttgctgcacaatgggagtgcctgttaggtaccaagtcttatagaacaagaccctctcgctgt |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1450703 |
ttaacaaagtcattcttcctaataggtactcttttcttttgctgcacaatgggagtgtctgttaggtaccaagtcttatagaacaagaccctctcgctgt |
1450802 |
T |
|
| Q |
154 |
ggtggatgatcaggttatagcctttcattagtcagtagttgatatgttgtcattgactactttgttgacataattcagttcagttgtattagacaagaca |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1450803 |
ggtggatgatcaggttatagcctttcattagtcagtacttgatatgttgtcattgactactttgttgacataattcagttcagttgtattagacaagaca |
1450902 |
T |
|
| Q |
254 |
ttttaaatgtttgattaagcattacttcttgaatttgttagtatag-tttttgagtgtatggatttattgcataggataggtagatatt |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1450903 |
ttttaaatgtttgattaagcattacttcttgaatttgttagtatagttttttgagtgcatggatttattgcataggataggtagatatt |
1450991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 35034494 - 35034542
Alignment:
| Q |
98 |
cacaatgggagtgcctgttaggtaccaagtcttatagaacaagaccctc |
146 |
Q |
| |
|
|||||||||||||| |||||||||| || |||| |||||||||||||| |
|
|
| T |
35034494 |
cacaatgggagtgcttgttaggtactgagacttaaagaacaagaccctc |
35034542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 168 - 302
Target Start/End: Original strand, 52473849 - 52473984
Alignment:
| Q |
168 |
ttatagcctttcattagtcagt--agttgatatgttgtcattgactactttgttgacataattcagttcagttgtattagacaagacattttaaatgttt |
265 |
Q |
| |
|
||||||| ||||||||||| || |||||| || ||| |||||||| ||| || ||||||| ||||||| || ||||||||||||| |||||| ||| |
|
|
| T |
52473849 |
ttatagcttttcattagtctgtgcagttgacatcttgccattgactggttttctg-cataatttagttcagctgcattagacaagacaatttaaagtttt |
52473947 |
T |
|
| Q |
266 |
gattaagcattacttcttgaatttgttagtatagttt |
302 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
52473948 |
gattaagtattacttcttgaatttgttagtatagttt |
52473984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University