View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11584_low_21 (Length: 345)
Name: NF11584_low_21
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11584_low_21 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 29677487 - 29677832
Alignment:
| Q |
1 |
cagcacctatagccatacaaagacaatggataacccc-caaaataacctcattcggatctaaaatcgggtcggagtttgggtcgggttgtatcatgatcg |
99 |
Q |
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| T |
29677487 |
cagcacctatagccatacaaagacaatggataaccccccaaaataacctcattcggatctaaagtcgggtcggagtttgggtcgggttgcatcatgatcg |
29677586 |
T |
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| Q |
100 |
ggattgtacccgctttttgaaacccggtatccaccaactccaacccatgacccggttcatcctcaatctcctgtgaagacgtgccaggtgtcaccccctc |
199 |
Q |
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| T |
29677587 |
gggttgtacccgctttttgaaacccggtatccaccaactccaacccatgacccgcttcatccccaatctcctgtgaagacgtgccaggtgtcaccccctc |
29677686 |
T |
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| Q |
200 |
caagtgacccacctatagcacgtgatcaatctcttttctcatcatgtgactggattgctccccttctccaaacagaacatcattatcttcactgccacct |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29677687 |
caagtgacccacctatagcacgtgatcaatctcttttctcatcatgtgactggattgctccccttctccaaacagaacatcattatcttcactgccacct |
29677786 |
T |
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| Q |
300 |
tttacctctacagcttgtacttttcctaaagtttccttttcttctc |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29677787 |
tttacctctacagcttgtacttttcctaaagtttccttttgttctc |
29677832 |
T |
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