View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11584_low_23 (Length: 341)
Name: NF11584_low_23
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11584_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 24323486 - 24323183
Alignment:
| Q |
20 |
tttttgaaaaagctttacaacgctttgattatttgaatgataatgcggataagatgataatcaaactaaaacaatgtttacggttaaccaattttgacca |
119 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
24323486 |
tttttgaaaaagctttacaacactttgattatttgaatgataatgcggataagatgataattaaactaaaacaatgtttacggttaaccaattttgaaca |
24323387 |
T |
|
| Q |
120 |
tgatgttcacaatttagataataatccacaatcaaattataaacactttattacaagtccttgacattctcaaatcaaacctaacacatagacaagagat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
24323386 |
tgatgttcacaatttagataataatccacaatcaaattataaacactttattacaagtccttgacattctcaaatcaaacttaacacttagacaagagat |
24323287 |
T |
|
| Q |
220 |
tatcacaaattgaaatctagctataacacaattgatgaattgattgatgtaaggatttctatatatcaaatgattaataaacttatataaaatcaaggtt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| | ||| |
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| T |
24323286 |
tatcacaaattgaaatctagctataacacaattgatgaattgattgatgtaaggatttctatatatcaagtgattaataaacttatagaaaatcgaagtt |
24323187 |
T |
|
| Q |
320 |
tatc |
323 |
Q |
| |
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|||| |
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| T |
24323186 |
tatc |
24323183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 75 - 323
Target Start/End: Original strand, 16241549 - 16241797
Alignment:
| Q |
75 |
gataatcaaactaaaacaatgtttacggttaaccaattttgaccatgatgttcacaatttagataataatccacaatcaaattataaacactttattaca |
174 |
Q |
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|||||||||||||||| ||| ||||| ||||||||||||| | || || |||||||||| | ||||| ||||||||| ||||| ||| ||||| |||||| |
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| T |
16241549 |
gataatcaaactaaaaaaatctttacagttaaccaattttaaacaagaagttcacaattgatataatgatccacaataaaattttaagcacttaattaca |
16241648 |
T |
|
| Q |
175 |
agtccttgacattctcaaatcaaa-cctaacacatagacaagagattatcacaaattgaaatctagctataacacaattgatgaattgattgatgtaagg |
273 |
Q |
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|| |||| ||||||||| || ||| || ||||| || |||||| |||| ||||| || ||| ||||| | ||| |||||||||||||||||||| ||| |
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| T |
16241649 |
agaccttaacattctcacatgaaaccccaacacttacacaagatattaacacaagtt-aaaactagc-acaacccaattgatgaattgattgatacaaga |
16241746 |
T |
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| Q |
274 |
atttct-atatatcaaatgattaataaacttatataaaatcaaggtttatc |
323 |
Q |
| |
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|||||| ||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
16241747 |
atttctaatatatcaagtgattaataaacttatagaaaatcaaggtttatc |
16241797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 323
Target Start/End: Original strand, 20313724 - 20314026
Alignment:
| Q |
21 |
ttttgaaaaagctttacaacgctttgattatttgaatgataatgcggataagatgataatcaaactaaaacaatgtttacggttaaccaattttgaccat |
120 |
Q |
| |
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|||||||||||| || ||||| ||| | |||| |||||||||||||||| | |||||||||||||||||||||||| |||| || ||||| | |
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| T |
20313724 |
ttttgaaaaagcattgcaacgatttcactattggaatgataatgcggatgctaggataatcaaactaaaacaatgtttttaattaatcagatttgaataa |
20313823 |
T |
|
| Q |
121 |
gatgttcacaatttagataataatccacaatcaaattataaacactttattacaagtccttgacattctcaaatcaaacctaacacatagacaagagatt |
220 |
Q |
| |
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|||||||| |||| | | ||| || ||||| ||||| || | ||| || | |||||||| ||||||||||||||||||||| || | ||| || || |
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| T |
20313824 |
gatgttcataattgataaaatgttctacaataaaatttcaagctcttaatcaaaagtccttaacattctcaaatcaaacctaaaactaacacatgaaatc |
20313923 |
T |
|
| Q |
221 |
atcacaaattgaaatctagctataacacaattgatgaattgattgatgtaaggatttct-atatatcaaatgattaataaacttat-ataaaatcaaggt |
318 |
Q |
| |
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||||| | | | |||||||||||| | ||||||||||||||||| ||||||| || |||||||| |||||||| || |||| | ||||||||||| |
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| T |
20313924 |
tacacaa--taataactagctataacatagttgatgaattgattgatacaaggattcctaatatatcaggtgattaatcaatttataaaaaaatcaaggt |
20314021 |
T |
|
| Q |
319 |
ttatc |
323 |
Q |
| |
|
||||| |
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|
| T |
20314022 |
ttatc |
20314026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 315
Target Start/End: Complemental strand, 4877592 - 4877318
Alignment:
| Q |
43 |
tttgattatttgaatgataatgcggataagatgataatcaaactaaaacaatgtttacggttaaccaattttgaccatgatgttcacaatttagataata |
142 |
Q |
| |
|
||||| |||| ||| ||||||| ||||| |||| ||||| |||||||||||||||| | || ||| ||| | || ||| ||||||||| | || | |
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| T |
4877592 |
tttgactattggaacgataatgtggatacaatgaaaatcacactaaaacaatgtttagaataaatcaaatttcaacaagatattcacaattggggtattg |
4877493 |
T |
|
| Q |
143 |
atccacaatcaaattataaacactttattacaagtccttgacattctcaaatcaaacctaacacatagacaagagattatcacaaattgaaatctagcta |
242 |
Q |
| |
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| ||||||||||||| ||||||| |||||||| |||||||||||||||||||||| ||| || ||| | ||||| ||||||||||||||| ||| |
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| T |
4877492 |
ttgcacaatcaaattagcaacacttaattacaagaccttgacattctcaaatcaaacataatctttaaacagaaaattattacaaattgaaatctaacta |
4877393 |
T |
|
| Q |
243 |
taacacaattgatgaattgattgatgtaaggatttct-atatatcaaatgattaata--aacttatataaaatcaa |
315 |
Q |
| |
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|| || |||||||| ||||||| ||| ||| || ||||| ||| ||||||||| ||||||||||||||||| |
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|
| T |
4877392 |
caa-ttaaatgatgaatggattgatacaagtattcctaatataccaagtgattaataccaacttatataaaatcaa |
4877318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 323
Target Start/End: Original strand, 9421040 - 9421126
Alignment:
| Q |
238 |
agctataacacaattgatgaattgattgatgtaaggatttc-tatatatcaaatgattaataaacttatataaaatcaaggtttatc |
323 |
Q |
| |
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||||||||||||||||||||||||||| || || |||||| ||||||||| |||| ||| ||||||| |||||| | ||||||| |
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| T |
9421040 |
agctataacacaattgatgaattgattaatacaaagatttcaaatatatcaagtgataaatccacttatagaaaatcgaagtttatc |
9421126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 16717576 - 16717504
Alignment:
| Q |
163 |
cactttattacaagtccttgacattctcaaatcaaacctaacacatagacaagagattatcacaaattgaaat |
235 |
Q |
| |
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||||| |||||||| ||| ||||||||||||||||||||| || || |||||| ||||| |||||||||||| |
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| T |
16717576 |
cacttaattacaagacctatacattctcaaatcaaacctaaaacttaaacaagaaattatgacaaattgaaat |
16717504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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