View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11584_low_24 (Length: 334)
Name: NF11584_low_24
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11584_low_24 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 51753472 - 51753789
Alignment:
| Q |
18 |
aaaattaaggttacatgctggctgaaatagtaaacaa-ttaagtgttgagaaaataaaagtgatagagagcattaacatgcacatttaagcnnnnnnntc |
116 |
Q |
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| T |
51753472 |
aaaattaaggttacatgctggctgaaatagtaatcaaattaagtgttgagaaaataaaagtgatagagagcattaacatgcacatttaagcaaaaaaatc |
51753571 |
T |
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| Q |
117 |
accttatagcgaactctactcaattctccttttggtgaagagatcttgatggatttctcactacaaaaagcaactttgtgagtggaaatgaagaggaggc |
216 |
Q |
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| T |
51753572 |
accttatagcgaactctactcaattctccttttggtgaagagatcttgatggatttctcactacaaaaagcaactttgtgagtggaaatgaagaggaggc |
51753671 |
T |
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| Q |
217 |
ctgctataggacctgatgttgttgataagtaacactgtgatgctttcaacagcttctctccatctttaacactaaaaagttccataaacactttttctac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51753672 |
ctgctataggacctgatgttgttgataagtaacactgtgatgctttcaacagcttctctccatctttaacactaaaaagttccataaacactttttctac |
51753771 |
T |
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| Q |
317 |
tccgccaacctgaagaat |
334 |
Q |
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| T |
51753772 |
tccgccaacctgaagaat |
51753789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 117 - 274
Target Start/End: Original strand, 51766339 - 51766496
Alignment:
| Q |
117 |
accttatagcgaactctactcaattctccttttggtgaagagatcttgatggatttctcactacaaaaagcaactttgtgagtggaaatgaagaggaggc |
216 |
Q |
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| T |
51766339 |
accttatagtgaactctaatcaattctccattcgaggaagaaattttgatggatttgtcactacagaaagcaattttgtgagtggaaatgaagaggaggc |
51766438 |
T |
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| Q |
217 |
ctgctataggacctgatgttgttgataagtaacactgtgatgctttcaacagcttctc |
274 |
Q |
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| T |
51766439 |
cagctataagacctgatgtggttgataggtaacactgagatgctttcaacagcttctc |
51766496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 144 - 334
Target Start/End: Original strand, 12196115 - 12196305
Alignment:
| Q |
144 |
ccttttggtgaagagatcttgatggatttctcactacaaaaagcaactttgtgagtggaaatgaagaggaggcctgctataggacctgatgttgttgata |
243 |
Q |
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| T |
12196115 |
ccttttggagaagagattttaattgatctctcactacaaaaggcaattttattagttgatatgaagagtaggcctgctagaggaccagatgttgttgata |
12196214 |
T |
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| Q |
244 |
agtaacactgtgatgctttcaacagcttctctccatctttaacactaaaaagttccataaacactttttctactccgccaacctgaagaat |
334 |
Q |
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| T |
12196215 |
gataacattgagatgcttttagtagcctctctccatcttttacactaaatagttgcatgaacaccttttccactcctccaacttgaagaat |
12196305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 282
Target Start/End: Original strand, 42395381 - 42395489
Alignment:
| Q |
174 |
tcactacaaaaagcaactttgtgagtggaaatgaagaggaggcctgctataggacctgatgttgttgataagtaacactgtgatgctttcaacagcttct |
273 |
Q |
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||||||||||| |||||||| || ||||| ||||| || | || || |||||||| | |||||| |||||||||| ||||| || ||||||| |||| |
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| T |
42395381 |
tcactacaaaatgcaactttttgggtggagatgaaaagaacaccagcaataggaccagctgttgtgtataagtaacattgtgaagccttcaacactttct |
42395480 |
T |
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| Q |
274 |
ctccatctt |
282 |
Q |
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|||| |||| |
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| T |
42395481 |
ctccttctt |
42395489 |
T |
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