View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11584_low_25 (Length: 322)

Name: NF11584_low_25
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11584_low_25
NF11584_low_25
[»] chr1 (1 HSPs)
chr1 (13-304)||(52263245-52263536)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 304
Target Start/End: Complemental strand, 52263536 - 52263245
Alignment:
Q  13 caaaggaaaaaggtaataaaagcagagcatcctagctaacataaagtaaaacaaaagcgacaagacattgaatacaagtcataccatgatgtccttgact 112  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52263536 caaaggaaaaaggtaataaaagcagaacatcctagctaacataaagtaaaacaaaagcgacaagacattgaatacaagtcataccatgatgtccttgact 52263437  T
Q  113 agcagcaatatgcaaaggatcaaaaccagatcgattctttttagaaacagtttgaagagttgaatgttttaacaactccttaacaacatcaagatgaccc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52263436 agcagcaatatgcaaaggatcaaaaccagatcgattctttttagaaacagtttgaagagttgaatgtttcaacaactccttaacaacatcaagatgaccc 52263337  T
Q  213 ttttcagcagcagtaaacaaagcagtttcaccaagttcattctcttcattaacaacaagagcacgaacctcagcaatctcagcgttaagatc 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  52263336 ttttcagcagcagtaaacaaagcagtttcaccaagttcattctcttcattcacaacaagagcacgaacttcagcaatctcagcgttaagatc 52263245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University