View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11584_low_27 (Length: 289)
Name: NF11584_low_27
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11584_low_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 14 - 289
Target Start/End: Complemental strand, 51754094 - 51753818
Alignment:
| Q |
14 |
agatgaacatgtttggaagaaaagatgatggttttgcacatggtatccgagagcatggtatgtaatcttggaagacctatcttcaatttttcacttttgc |
113 |
Q |
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| T |
51754094 |
agatgaacatgtttggaagaaaagatgatggttttgcacatggtatccgagagcatggtatgtaatcttggaagacctatcttcaatttttcacttttgc |
51753995 |
T |
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| Q |
114 |
tttgtt-caaggcatggaacaagcactttgtaatggtacttgatgaaaatgcaaatatcttgtaatagcttccaaaactactaagcttagattaattcca |
212 |
Q |
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| T |
51753994 |
ttagtttcaaggcatggaacaagcactttgtaatggtacttgatgaaaatgcaaatatcttgtaatagcttccaaaactactaagcttagattaattcca |
51753895 |
T |
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| Q |
213 |
aaaatagttgtacctgatagcttgaaactgttattttaccctgcagtgagacttggaccaaagataacagatacagt |
289 |
Q |
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| T |
51753894 |
aaaatagttgtacctgatagcttgaaactgttattttaccctgcagtgagacttggaccaaagataacagatacagt |
51753818 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 5522848 - 5522949
Alignment:
| Q |
14 |
agatgaacatgtttggaagaaaagatgatggttttgcacatggtatccgagagcatggtatgtaatcttggaagacctatcttcaatttttcacttttgc |
113 |
Q |
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|||||||||||||||||||||| | ||| ||||||||||||| ||| ||||||||||||||||||| |||| ||||||||| |||||| ||||| |
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| T |
5522848 |
agatgaacatgtttggaagaaagggtgacagttttgcacatggagtccaagagcatggtatgtaatctccaaagattaatcttcaatgtttcacctttgc |
5522947 |
T |
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| Q |
114 |
tt |
115 |
Q |
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| T |
5522948 |
tt |
5522949 |
T |
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