View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11584_low_30 (Length: 252)

Name: NF11584_low_30
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11584_low_30
NF11584_low_30
[»] scaffold0288 (1 HSPs)
scaffold0288 (1-200)||(2852-3051)
[»] chr6 (12 HSPs)
chr6 (1-148)||(4626750-4626897)
chr6 (1-133)||(4514322-4514454)
chr6 (31-133)||(4517150-4517252)
chr6 (1-133)||(4602591-4602723)
chr6 (23-158)||(4506678-4506812)
chr6 (34-176)||(4298980-4299121)
chr6 (34-132)||(4557957-4558055)
chr6 (9-133)||(4593041-4593165)
chr6 (43-133)||(4481534-4481624)
chr6 (36-110)||(4599004-4599078)
chr6 (1-133)||(4617824-4617956)
chr6 (79-133)||(4580918-4580972)
[»] scaffold0477 (2 HSPs)
scaffold0477 (198-242)||(3266-3310)
scaffold0477 (47-176)||(3848-3976)
[»] chr8 (1 HSPs)
chr8 (34-133)||(16685487-16685586)
[»] chr3 (1 HSPs)
chr3 (1-133)||(1281916-1282048)


Alignment Details
Target: scaffold0288 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 3051 - 2852
Alignment:
Q  1 aattctaccataaaatcattcagatcttttgttcttataaagtcaggaaggtccttcagtcgaaagtttttcatacccggaatacaatctactttgttgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3051 aattctaccataaaatcattcagatcttttgttcttataaagtcaggaaggtcctttagtcgaaagtttttcatacccggaatacaatctactttgttgt 2952  T
Q  101 ccaaatatccacttgtcaaataactgtcatctgattgtcataattacagaaagttaataatttgaagcctcatatacatatatcggattgatcaagttag 200  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2951 ccaaatatccacttgtcaaataactatcatctgcttgtcataattacagaaagttaataatttgaagcctcatatacatatatcggattgatcaagttag 2852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 4626750 - 4626897
Alignment:
Q  1 aattctaccataaaatcattcagatcttttgttcttataaagtcaggaaggtccttcagtcgaaagtttttcatacccggaatacaatctactttgttgt 100  Q
    ||||||||||| | ||||||  ||| | |||| |||||||||| | ||||||||||||| |||||||| | ||  || ||||||||||||| |||| |||    
T  4626750 aattctaccatgacatcattaggatttgttgtccttataaagttaagaaggtccttcagccgaaagttctgcaatccgggaatacaatctagtttggtgt 4626849  T
Q  101 ccaaatatccacttgtcaaataactgtcatctgattgtcataattaca 148  Q
    | ||||||||| ||||||||||| | ||||||| || |||||||||||    
T  4626850 ctaaatatccatttgtcaaataagtctcatctgcttttcataattaca 4626897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 4514454 - 4514322
Alignment:
Q  1 aattctaccataaaatcattcagatcttttgttcttataaagtcaggaaggtccttcagtcgaaagtttttcatacccggaatacaatctactttgttgt 100  Q
    ||||||| ||| ||||||||   |||| |||| | |||||| ||||||||||||||||||| |||||||  || ||| ||||| || || |||||  |||    
T  4514454 aattctaacatcaaatcattagcatctgttgtccgtataaaatcaggaaggtccttcagtctaaagtttcgcaaacctggaatccagtcaactttagtgt 4514355  T
Q  101 ccaaatatccacttgtcaaataactgtcatctg 133  Q
    ||||||||||| ||||||||||||| |||||||    
T  4514354 ccaaatatccatttgtcaaataactctcatctg 4514322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 4517150 - 4517252
Alignment:
Q  31 gttcttataaagtcaggaaggtccttcagtcgaaagtttttcatacccggaatacaatctactttgttgtccaaatatccacttgtcaaataactgtcat 130  Q
    ||||||||||||||||| |||||||| |||| |||||||  || ||| ||||| || || |||||  |||||||||||||| ||||||||||||| ||||    
T  4517150 gttcttataaagtcaggcaggtcctttagtctaaagtttcccaaacctggaatccagtcaactttagtgtccaaatatccatttgtcaaataactctcat 4517249  T
Q  131 ctg 133  Q
    |||    
T  4517250 ctg 4517252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 4602591 - 4602723
Alignment:
Q  1 aattctaccataaaatcattcagatcttttgttcttataaagtcaggaaggtccttcagtcgaaagtttttcatacccggaatacaatctactttgttgt 100  Q
    ||||||||||||| ||||||  ||||| |||| || ||| ||||| ||| ||||||||  ||||||||||||| ||| ||||| |||||||||||  | |    
T  4602591 aattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtccttcaaccgaaagtttttcaaacctggaatccaatctacttttgttt 4602690  T
Q  101 ccaaatatccacttgtcaaataactgtcatctg 133  Q
    ||||| ||||| |||| | |||||| |||||||    
T  4602691 ccaaacatccatttgttagataactatcatctg 4602723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 4506678 - 4506812
Alignment:
Q  23 gatcttttgttcttataaagtcaggaaggtccttcagtcgaaagtttttcatacccggaatacaatctactttgttgtccaaatatccacttgtcaaata 122  Q
    ||||| |||| |||||||| |||||||| || ||||||| ||||||| ||| ||| ||||| || ||||| ||  |||||||||||||| |||| | |||    
T  4506678 gatctgttgtccttataaaatcaggaagatctttcagtctaaagtttctcaaacctggaatccagtctaccttagtgtccaaatatccatttgttagata 4506777  T
Q  123 actgtcatctgattgtcataattacagaaagttaat 158  Q
    ||| |||||||  | ||||||||||| |||||||||    
T  4506778 actctcatctgcatatcataattaca-aaagttaat 4506812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 176
Target Start/End: Complemental strand, 4299121 - 4298980
Alignment:
Q  34 cttataaagtcaggaaggtccttcagtcgaaagtttttcatacccggaatacaatctactttgttgtccaaatatccacttgtcaaataactgtcatctg 133  Q
    |||||||||||||  || || |||| ||||||||| | ||  || |||||||| |||| |||| |||| ||||||||  ||||||||||||| |||||||    
T  4299121 cttataaagtcagttagatctttcaatcgaaagttctgcaatcctggaatacagtctagtttgatgtctaaatatccgtttgtcaaataactctcatctg 4299022  T
Q  134 attgtcataattacagaaagttaataatttgaagcctcatata 176  Q
     |||||||||||| || |||| ||||  ||||||| |||||||    
T  4299021 cttgtcataattatag-aagtcaatagcttgaagcttcatata 4298980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 4557957 - 4558055
Alignment:
Q  34 cttataaagtcaggaaggtccttcagtcgaaagtttttcatacccggaatacaatctactttgttgtccaaatatccacttgtcaaataactgtcatct 132  Q
    |||||||||||||| || ||||||||||||||||| | ||  || ||||||||||| |||||  |||||||||||||  |||||| |||||| ||||||    
T  4557957 cttataaagtcaggcagatccttcagtcgaaagttctgcaatcctggaatacaatccactttagtgtccaaatatccgtttgtcagataactctcatct 4558055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 4593041 - 4593165
Alignment:
Q  9 cataaaatcattcagatcttttgttcttataaagtcaggaaggtccttcagtcgaaagtttttcatacccggaatacaatctactttgttgtccaaatat 108  Q
    ||||| ||||||  ||||| |||| || ||| |||||| || ||||||||  ||||||||||||| ||| ||||| |||||||||||  | |||||||||    
T  4593041 cataatatcatttggatctgttgtcctgatatagtcagcaatgtccttcaaccgaaagtttttcaaacctggaatccaatctactttagtttccaaatat 4593140  T
Q  109 ccacttgtcaaataactgtcatctg 133  Q
    ||| |||| | |||||| |||||||    
T  4593141 ccatttgttagataactctcatctg 4593165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 4481534 - 4481624
Alignment:
Q  43 tcaggaaggtccttcagtcgaaagtttttcatacccggaatacaatctactttgttgtccaaatatccacttgtcaaataactgtcatctg 133  Q
    |||||||||||||||| || ||||||||||| ||| ||||| || |||||| |   |||||||||||||  ||| |||||||| |||||||    
T  4481534 tcaggaaggtccttcaatctaaagtttttcaaacctggaatccagtctactgttgcgtccaaatatccatctgttaaataactctcatctg 4481624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 4599004 - 4599078
Alignment:
Q  36 tataaagtcaggaaggtccttcagtcgaaagtttttcatacccggaatacaatctactttgttgtccaaatatcc 110  Q
    |||||| |||||||| || |||||||||||||||| ||  || |||||||||||||||||  | |||||||||||    
T  4599004 tataaaatcaggaagatctttcagtcgaaagttttgcagtccaggaatacaatctactttagtttccaaatatcc 4599078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 4617824 - 4617956
Alignment:
Q  1 aattctaccataaaatcattcagatcttttgttcttataaagtcaggaaggtccttcagtcgaaagtttttcatacccggaatacaatctactttgttgt 100  Q
    ||||||| ||||| ||||||  ||| | |||| || |||||||||   | ||||||||  ||||||||||||| ||| ||||| |||||||||||  | |    
T  4617824 aattctaacataatatcatttggatttgttgtcctgataaagtcaacgatgtccttcaaccgaaagtttttcaaaccgggaatccaatctactttagttt 4617923  T
Q  101 ccaaatatccacttgtcaaataactgtcatctg 133  Q
    ||||| ||||| |||| | |||||| |||||||    
T  4617924 ccaaacatccatttgttagataactctcatctg 4617956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 4580918 - 4580972
Alignment:
Q  79 ggaatacaatctactttgttgtccaaatatccacttgtcaaataactgtcatctg 133  Q
    |||||||||||||||||  |||||||||||||  |||| | ||||||||||||||    
T  4580918 ggaatacaatctactttagtgtccaaatatccgtttgtgagataactgtcatctg 4580972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 3266 - 3310
Alignment:
Q  198 tagaggctaataatagtttataaatccccacacacctcacctatg 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  3266 tagaggctaataatagtttataaatccccacacacctcacctatg 3310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 176
Target Start/End: Complemental strand, 3976 - 3848
Alignment:
Q  47 gaaggtccttcagtcgaaagtttttcatacccggaatacaatctactttgttgtccaaatatccacttgtcaaataactgtcatctgattgtcataatta 146  Q
    ||||||||||||| |||||||| | ||  || |||||||  |||||| | ||||| ||||||||| ||||||||||||| || |||  || ||||||||     
T  3976 gaaggtccttcagccgaaagttctgcaatcctggaataccgtctactctattgtctaaatatccatttgtcaaataactctcgtctccttttcataattg 3877  T
Q  147 cagaaagttaataatttgaagcctcatata 176  Q
     || |||||||||  ||||||| |||||||    
T  3876 tag-aagttaatagcttgaagcttcatata 3848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 16685586 - 16685487
Alignment:
Q  34 cttataaagtcaggaaggtccttcagtcgaaagtttttcatacccggaatacaatctactttgttgtccaaatatccacttgtcaaataactgtcatctg 133  Q
    |||||||||||||| || |||||||||||||  || | ||  || |||||||| || |||||  |||||||||||||  |||||| |||||| |||||||    
T  16685586 cttataaagtcaggcagatccttcagtcgaatattctgcaatcctggaatacagtccactttagtgtccaaatatccgtttgtcagataactctcatctg 16685487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 1281916 - 1282048
Alignment:
Q  1 aattctaccataaaatcattcagatcttttgttcttataaagtcaggaaggtccttcagtcgaaagtttttcatacccggaatacaatctactttgttgt 100  Q
    ||||||| ||||| ||| ||  ||||| |||| || |||||||||  ||  |||||||  || || ||||||| ||| ||||| |||||||||||  | |    
T  1281916 aattctaacataatatcgtttcgatctcttgtcctgataaagtcaacaatatccttcaaccggaaatttttcaaacctggaatccaatctacttttgttt 1282015  T
Q  101 ccaaatatccacttgtcaaataactgtcatctg 133  Q
    ||||||||||| |||| | |||||| |||||||    
T  1282016 ccaaatatccatttgttagataactctcatctg 1282048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University