View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11584_low_32 (Length: 240)
Name: NF11584_low_32
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11584_low_32 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 8337812 - 8337592
Alignment:
| Q |
20 |
ctctttatcattcctaccctctttcatttactggtaaatgtcattaactaatgcttttaaacatcacaaaagtaagaagatttatgttcttccatttttt |
119 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8337812 |
ctctttatcattcctaccctctttcatttactgctaaacgtcattaactaatgcttttaaacatcacaaaagtaagaagatttatgttcttccatttttt |
8337713 |
T |
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| Q |
120 |
cagtcataacttattgtttcttaaattcacatggtttacagatctgttttttccaacttgtgttcatgtccaaatctcatttattattttcttccttcaa |
219 |
Q |
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| T |
8337712 |
cagtcataacttattgtttcttaaatttacatggtttccagatctgttttttccaatttgtgttcatgtccaaatctcatttattattttcttccttcaa |
8337613 |
T |
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| Q |
220 |
gtttttgttcacgatcttctc |
240 |
Q |
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||||| |||||| |||||||| |
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| T |
8337612 |
gttttagttcacaatcttctc |
8337592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 10235094 - 10234871
Alignment:
| Q |
18 |
ccctctttatcattcctaccctctttcatttactggtaaatgtcattaactaatgcttttaaacatcacaaaagtaagaagatttatgttcttccatttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10235094 |
ccctctttatcattcctaccctctttcatttactggtaaacatcattaactaatgcttttaaacatcacaaaagtaagaagatttatgttcttccatttt |
10234995 |
T |
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| Q |
118 |
ttcagtcataacttattgtttctt-aaattcacatggtttacagatctgttttttccaacttgtgttcatgtccaaatctcatttattattttcttcctt |
216 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10234994 |
ttcagtcataacttattgtttcttaaaaatcacatggtttccagatctgttttttccaacttgtgtttatgtccaaatctcatttattattttcttcctt |
10234895 |
T |
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| Q |
217 |
caagtttttgttcacgatcttctc |
240 |
Q |
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| T |
10234894 |
caagtttttgttcacaatcttctc |
10234871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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