View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11584_low_33 (Length: 240)
Name: NF11584_low_33
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11584_low_33 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0288 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 3032 - 3259
Alignment:
| Q |
1 |
aatgattttatggtagaatttttcattgaagcagcagatcaatttcacagagcttctgcaactgtttttaacacttataatgaacttgagagtgatgtac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3032 |
aatgattttatggtagaatttttcattgaagcagcagatcaatttcacagagcttctgcaattgtttttaacacttataatgaacttgagagtgatgtac |
3131 |
T |
|
| Q |
101 |
tgaatgcgctccactctatgttcccatcattatacaatatcggaccattaccttcattattaagtccaactccacataatcacttggaatc-tttaggtt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
3132 |
tgaatgcgctccactctatgttcccatcattatacagtatcggaccattaccttcattattaagtcaaactccacataatcacttggaatcttttaggtt |
3231 |
T |
|
| Q |
200 |
ccaatctttggaaagaagataccaagtg |
227 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
3232 |
ccaatctttggaaagaagataccaagtg |
3259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 23)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 4299135 - 4299358
Alignment:
| Q |
1 |
aatgattttatggtagaatttttcattgaagcagcagatcaatttcacagagcttctgcaactgtttttaacacttataatgaacttgagagtgatgtac |
100 |
Q |
| |
|
|||||| | |||||||||||| ||||||||| |||||| |||||||| ||| ||||| | ||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
4299135 |
aatgatgtcatggtagaatttgccattgaagcggcagatagatttcacaaagcatctgctattgtttttaatacttatgatgaacttgagagtgatgtaa |
4299234 |
T |
|
| Q |
101 |
tgaatgcgctccactctatgttcccatcattatacaatatcggaccattaccttcattattaagtccaactccacataatcacttggaatctttaggttc |
200 |
Q |
| |
|
||||||| ||| | ||||||||||| || ||||| | ||| ||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
4299235 |
tgaatgctctctattctatgttcccttctttatatactattggacctttaccttcattattaaatcaaactccacataatcacttggaatctttaggttc |
4299334 |
T |
|
| Q |
201 |
caatctttggaaagaagataccaa |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4299335 |
caatctttggaaagaagataccaa |
4299358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 4255935 - 4256164
Alignment:
| Q |
1 |
aatgattttatggtagaatttttcattgaagcagcagatcaatttcacagagcttctgcaactgtttttaacacttataatgaacttgagagtgatgtac |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||| |||| ||||| ||||| ||||| | |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4255935 |
aatgattctatggtagaatttttcattgaagcggcaaatcattttcatagagcctctgctattgtttttaacacttataatgaacttgagagcgatgtat |
4256034 |
T |
|
| Q |
101 |
tgaatgcgctc---cactctatgttcccatcattatacaatatcggaccattaccttcattattaagtccaactccacataatcacttggaatctttagg |
197 |
Q |
| |
|
||||||| ||| | ||||||||| | | || || | || ||||| |||||||||||||||| || ||||||||||| |||||||| ||| ||||| |
|
|
| T |
4256035 |
tgaatgctctctattattctatgttctcttgtttgtataccattggacctttaccttcattattaaatcaaactccacatagtcacttggcatcgttagg |
4256134 |
T |
|
| Q |
198 |
ttccaatctttggaaagaagataccaagtg |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
4256135 |
ttccaatctttggaaagaagataccaagtg |
4256164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 4259468 - 4259691
Alignment:
| Q |
1 |
aatgattttatggtagaatttttcattgaagcagcagatcaatttcacagagcttctgcaactgtttttaacacttataatgaacttgagagtgatgtac |
100 |
Q |
| |
|
|||||| | |||||||| |||||||| ||||| |||||| |||| ||||| || || | ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4259468 |
aatgatgtcatggtagattttttcatggaagcggcagatggattttgtagagcatcagctatcgtttttaacacttatgatgaacttgagagtgatgtaa |
4259567 |
T |
|
| Q |
101 |
tgaatgcgctccactctatgttcccatcattatacaatatcggaccattaccttcattattaagtccaactccacataatcacttggaatctttaggttc |
200 |
Q |
| |
|
|||||| |||| | ||||||||||| || ||||| ||| ||||| |||||||||||||||| || |||||||||||||||| ||| ||| |||||||| |
|
|
| T |
4259568 |
tgaatgtgctctattctatgttcccttctttatatgctattggacctttaccttcattattaaatcaaactccacataatcacctggcatcgttaggttc |
4259667 |
T |
|
| Q |
201 |
caatctttggaaagaagataccaa |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4259668 |
caatctttggaaagaagataccaa |
4259691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 4622958 - 4622732
Alignment:
| Q |
1 |
aatgattttatggtagaatttttcattgaagcagcagatcaatttcacagagcttctgcaactgtttttaacacttataatgaacttgagagtgatgtac |
100 |
Q |
| |
|
|||||| | |||||||||||| |||||||||| ||||| | |||||||| | | ||||| | | ||||||| ||||||||||||||||||| ||||| |
|
|
| T |
4622958 |
aatgatgtcatggtagaatttctcattgaagcggcagaacgatttcacaaatcctctgctattatttttaatacttataatgaacttgagactgatgcga |
4622859 |
T |
|
| Q |
101 |
tgaatgcgctccactctatgttcccatcattatacaatatcggaccattaccttcattattaagtccaactccacataatcacttggaatctttaggttc |
200 |
Q |
| |
|
||||||||||| | || ||||||||||| || || | | ||||| |||||||||||||||| || |||||||||||||||||||| |||| ||||||| |
|
|
| T |
4622858 |
tgaatgcgctctattcaatgttcccatctttgtataccgttggacctttaccttcattattaaatcaaactccacataatcacttggcatctctaggttc |
4622759 |
T |
|
| Q |
201 |
caatctttggaaagaagataccaagtg |
227 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
4622758 |
caatctttggaaagaagatatcaagtg |
4622732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3172559 - 3172339
Alignment:
| Q |
1 |
aatgattttatggtagaatttttcattgaagcagcagatcaatttcacagagcttctgcaactgtttttaacacttataatgaacttgagagtgatgtac |
100 |
Q |
| |
|
|||||||| ||| |||||||| | ||||||| || |||| ||| ||||| ||||||||| | |||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
3172559 |
aatgatttgatgatagaatttatgattgaagtaggagataaatgtcacaaagcttctgctattgttttcaacacttctaatgaacttgagagtgatgtta |
3172460 |
T |
|
| Q |
101 |
tgaatgcgctccactctatgttcccatcattatacaatatcggaccattaccttcattattaagtccaactccacataatcacttggaatctttaggttc |
200 |
Q |
| |
|
||||| | || ||||| ||||| || |||||| || || || || |||| || ||||||| || ||| || |||||||||| |||||||| ||| |
|
|
| T |
3172459 |
tgaatactcttagttctatattcccttctctatacacaattggtccgttcgcttcgtttttaagtcaaagtccgcaaaatcacttggcatctttagattc |
3172360 |
T |
|
| Q |
201 |
caatctttggaaagaagatac |
221 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3172359 |
taatctttggaaagaagatac |
3172339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4626769 - 4626546
Alignment:
| Q |
1 |
aatgattttatggtagaatttttcattgaagcagcagatcaatttcacagagcttctgcaactgtttttaacacttataatgaacttgagagtgatgtac |
100 |
Q |
| |
|
|||||| | |||||||||||| |||||||||| |||||| |||||||||||| || || | |||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
4626769 |
aatgatgtcatggtagaatttctcattgaagcggcagatagatttcacagagcatcggctattgttttcaacacttacgatgaacttgagggtgatgtaa |
4626670 |
T |
|
| Q |
101 |
tgaatgcgctccactctatgttcccatcattatacaatatcggaccattaccttcattattaagtccaactccacataatcacttggaatctttaggttc |
200 |
Q |
| |
|
||||||||||| | |||| ||||| || |||| | || ||||| || | ||| | || | || || |||||| || || ||| |||||||||||| |
|
|
| T |
4626669 |
tgaatgcgctctattctacgttcctttctgtatataccattggacctttgcattctcttttgaatcgaagtccacaaaaccagttgatatctttaggttc |
4626570 |
T |
|
| Q |
201 |
caatctttggaaagaagataccaa |
224 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
4626569 |
caatctttggaaagaagacaccaa |
4626546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 221
Target Start/End: Original strand, 4266559 - 4266700
Alignment:
| Q |
80 |
atgaacttgagagtgatgtactgaatgcgctccactctatgttcccatcattatacaatatcggaccattaccttcattattaagtccaactccacataa |
179 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| ||||||||||||| || |||||| || || ||||| |||| || |||| || || |||||| || |
|
|
| T |
4266559 |
atgaacttgagagtgatgttatgaatgctctctactctatgttcccttctatatacaccattggcccatttgcttcttttttaaatcaaagtccacaaaa |
4266658 |
T |
|
| Q |
180 |
tcacttggaatctttaggttccaatctttggaaagaagatac |
221 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
4266659 |
tcacttggcatctttaaattccaatctttggaaagaagatac |
4266700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 221
Target Start/End: Original strand, 4514478 - 4514655
Alignment:
| Q |
44 |
ttcacagagcttctgcaactgtttttaacacttataatgaacttgagagtgatgtactgaatgcgctccactctatgttcccatcattatacaatatcgg |
143 |
Q |
| |
|
|||| ||||||||||| | | |||| || |||| |||||| |||||||||||||| ||||||| || | |||||| |||| || |||||| || || |
|
|
| T |
4514478 |
ttcatagagcttctgctatttttttaaatacttctaatgatcttgagagtgatgttatgaatgctctttattctatgctcccttctctatacaccattgg |
4514577 |
T |
|
| Q |
144 |
accattaccttcattattaagtccaactccacataatcacttggaatctttaggttccaatctttggaaagaagatac |
221 |
Q |
| |
|
||||| |||| || || | || || |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4514578 |
cccatttgcttcgtttttgaatcaaagtccacaaaatcacttggaatctttaggttccaatctttggaaagaagatac |
4514655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 4602538 - 4602387
Alignment:
| Q |
73 |
acttataatgaacttgagagtgatgtactgaatgcgctccactctatgttcccatcattatacaatatcggaccattaccttcattattaagtccaactc |
172 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||| || | ||||||||||| || ||||| | ||||||||| || | ||||||||||| || ||||| |
|
|
| T |
4602538 |
acttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgcattcattattaaatcaaactc |
4602439 |
T |
|
| Q |
173 |
caca---taatcacttggaatctttaggttccaatctttggaaagaagatac |
221 |
Q |
| |
|
|||| | |||| ||||| | |||||||||||| || |||||||||||||| |
|
|
| T |
4602438 |
cacaaattcatcaattggactgtttaggttccaacctctggaaagaagatac |
4602387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 4458334 - 4458193
Alignment:
| Q |
80 |
atgaacttgagagtgatgtactgaatgcgctccactctatgttcccatcattatacaatatcggaccattaccttcattattaagtccaactccacataa |
179 |
Q |
| |
|
||||||||||||||||||| ||||| | ||| ||||||||||||| || |||||| || || ||||| |||| || ||| || || |||||| || |
|
|
| T |
4458334 |
atgaacttgagagtgatgttatgaatactctctactctatgttcccttctatatacaccattggcccatttgcttcttttataaatcaaagtccacaaaa |
4458235 |
T |
|
| Q |
180 |
tcacttggaatctttaggttccaatctttggaaagaagatac |
221 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||| |||| |
|
|
| T |
4458234 |
tcacttggcatctttaaattccaatctttggaaagaatatac |
4458193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 4557806 - 4557717
Alignment:
| Q |
138 |
tatcggaccattaccttcattattaagtccaactccacataatcacttggaatctttaggttccaatctttggaaagaagataccaagtg |
227 |
Q |
| |
|
|||||| || ||| ||||| | ||||||| || ||||||||||||||||| | |||| || ||||||||||||||||||||| |||||| |
|
|
| T |
4557806 |
tatcggccctttatcttcacttttaagtcaaagtccacataatcacttggcaagtttaagtaccaatctttggaaagaagataacaagtg |
4557717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 4561250 - 4561102
Alignment:
| Q |
73 |
acttataatgaacttgagagtgatgtactgaatgcgctccactctatgttcccatcattatacaatatcggaccattaccttcattattaagtccaactc |
172 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| || | ||||||||||| || |||||| || || |||||| |||| || ||| || || || |
|
|
| T |
4561250 |
acttctaatgaacttgagagtgatgttatgaatgctttctattctatgttcccttctctatacacaattggtccattagcttcttttgtaaatcaaagtc |
4561151 |
T |
|
| Q |
173 |
cacataatcacttggaatctttaggttccaatctttggaaagaagatac |
221 |
Q |
| |
|
|||| ||||||||| |||||||| | |||||||||||||||||||| |
|
|
| T |
4561150 |
cacaaaatcacttgacatctttagactgtaatctttggaaagaagatac |
4561102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 4564385 - 4564303
Alignment:
| Q |
148 |
ttaccttcattattaagtccaactccacata---atcacttggaatctttaggttccaatctttggaaagaagataccaagtg |
227 |
Q |
| |
|
|||||||||||||||| | ||||||||| | |||| ||||| |||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
4564385 |
ttaccttcattattaaaccaaactccacaaattcatcaattggattctttaggttccaacctttggaaagaagatactaagtg |
4564303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 4575054 - 4574906
Alignment:
| Q |
73 |
acttataatgaacttgagagtgatgtactgaatgcgctccactctatgttcccatcattatacaatatcggaccattaccttcattattaagtccaactc |
172 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| || | ||||||||||| || |||||| || || |||||| |||| || ||| || || || |
|
|
| T |
4575054 |
acttctaatgaacttgagagtgatgttatgaatgctttctattctatgttcccttctctatacacaattggtccattagcttcttttgtaaatcaaagtc |
4574955 |
T |
|
| Q |
173 |
cacataatcacttggaatctttaggttccaatctttggaaagaagatac |
221 |
Q |
| |
|
|||| ||| ||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
4574954 |
cacaaaatgacttgacatctttagactctaatctttggaaagaagatac |
4574906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 4598806 - 4598763
Alignment:
| Q |
184 |
ttggaatctttaggttccaatctttggaaagaagataccaagtg |
227 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4598806 |
ttggcatctttaggtaccaatctttggaaagaagataccaagtg |
4598763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 4613191 - 4613258
Alignment:
| Q |
160 |
ttaagtccaactccacataatcacttggaatctttaggttccaatctttggaaagaagataccaagtg |
227 |
Q |
| |
|
||||||| || |||||| |||||||||| | |||| || |||||||||||||||||||||||||||| |
|
|
| T |
4613191 |
ttaagtcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataccaagtg |
4613258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 4506662 - 4506455
Alignment:
| Q |
14 |
tagaatttttcattgaagcagcagatcaatttcacagagcttctgcaactgtttttaacacttataatgaacttgagagtgatgtactgaatgcgctcca |
113 |
Q |
| |
|
|||||||| | |||||||||||||| |||||| ||||| ||| | | |||| | || |||| |||||||||||||||| |||| |||||||| || | |
|
|
| T |
4506662 |
tagaatttattattgaagcagcagaaacatttcatagagcctcttctattgttctcaatacttctaatgaacttgagagtaatgttctgaatgctcttga |
4506563 |
T |
|
| Q |
114 |
ctctatgttcccatcattatacaatatcggaccattaccttcattattaagtccaactccacataatcacttggaatctttaggttccaatctttggaaa |
213 |
Q |
| |
|
|||||| || || |||||| ||| || || ||| ||||||| ||| || || |||||| ||||| || | | |||||| ||| |||||||||||| |
|
|
| T |
4506562 |
tattatgtttccttctctatacactattggccctttaacttcatttgtaaatcaaagtccacaaaatcagtttgcaactttagattcaaatctttggaaa |
4506463 |
T |
|
| Q |
214 |
gaagatac |
221 |
Q |
| |
|
|| ||||| |
|
|
| T |
4506462 |
gaggatac |
4506455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 4568682 - 4568643
Alignment:
| Q |
181 |
cacttggaatctttaggttccaatctttggaaagaagata |
220 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4568682 |
cacttggcttctttaggttccaatctttggaaagaagata |
4568643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 4571631 - 4571564
Alignment:
| Q |
160 |
ttaagtccaactccacataatcacttggaatctttaggttccaatctttggaaagaagataccaagtg |
227 |
Q |
| |
|
||||||| || |||||| |||||||||| | |||| || ||||||||||||||||||||| |||||| |
|
|
| T |
4571631 |
ttaagtcaaagtccacagaatcacttggcaagtttaagtaccaatctttggaaagaagataacaagtg |
4571564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 4461771 - 4461721
Alignment:
| Q |
171 |
tccacataatcacttggaatctttaggttccaatctttggaaagaagatac |
221 |
Q |
| |
|
|||||| |||||| ||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
4461771 |
tccacaaaatcacctggcatctttaaattccaatctttggaaagaagatac |
4461721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 4617696 - 4617620
Alignment:
| Q |
148 |
ttaccttcattattaagtccaactccacata---atcacttggaatctttaggttccaatctttggaaagaagatac |
221 |
Q |
| |
|
|||||||||||||||| | ||||||||| | |||| ||||| ||||||| |||||| ||||||||||||||||| |
|
|
| T |
4617696 |
ttaccttcattattaaaacaaactccacaaattcatcaattggactctttagattccaacctttggaaagaagatac |
4617620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 4481432 - 4481291
Alignment:
| Q |
80 |
atgaacttgagagtgatgtactgaatgcgctccactctatgttcccatcattatacaatatcggaccattaccttcattattaagtccaactccacataa |
179 |
Q |
| |
|
||||||||||||||||||| ||||| | ||| | ||||| ||||| || |||||| || || ||||| |||| || |||| || || |||||| | |
|
|
| T |
4481432 |
atgaacttgagagtgatgttatgaattctctctattctatattcccttctctatacaccattggtccattggcttcttttttaaatcaaagtccacaata |
4481333 |
T |
|
| Q |
180 |
tcacttggaatctttaggttccaatctttggaaagaagatac |
221 |
Q |
| |
|
|||||||||| | |||| || |||||||||||||||||||| |
|
|
| T |
4481332 |
tcacttggaaacattagactctaatctttggaaagaagatac |
4481291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 4568800 - 4568764
Alignment:
| Q |
63 |
tgtttttaacacttataatgaacttgagagtgatgta |
99 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||| |
|
|
| T |
4568800 |
tgttttcaatacttataatgaacttgagagtgatgta |
4568764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 67 - 227
Target Start/End: Complemental strand, 3087172 - 3087012
Alignment:
| Q |
67 |
tttaacacttataatgaacttgagagtgatgtactgaatgcgctccactctatgttcccatcattatacaatatcggaccattaccttcattattaagtc |
166 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||| | ||| ||||||| |||||||| | || ||||||||||||||| || ||| || |
|
|
| T |
3087172 |
tttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattctgtgttcccttcattatataccattggaccattaccttcactactaaatc |
3087073 |
T |
|
| Q |
167 |
caactccacataatcacttggaatctttaggttccaatctttggaaagaagataccaagtg |
227 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3087072 |
aaacttcacataatcacttggcatctttaggttccaatctttggaaagaagataccaagtg |
3087012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 63 - 227
Target Start/End: Original strand, 4065 - 4226
Alignment:
| Q |
63 |
tgtttttaacacttataatgaacttgagagtgatgtactgaatgcgctccactctatgttcccatcattatacaatatcggaccattaccttcattatta |
162 |
Q |
| |
|
|||||| |||||||| ||||||||||||| | |||| ||||||| ||| | ||||||||||| || ||||| | || ||||| ||| ||||||||||| |
|
|
| T |
4065 |
tgttttcaacacttacgatgaacttgagagcggtgtattgaatgctctctattctatgttcccttctttatataccattggacctttaacttcattatta |
4164 |
T |
|
| Q |
163 |
agtccaactccacataatcacttggaatctttaggttccaatctttggaaagaagataccaagtg |
227 |
Q |
| |
|
| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4165 |
aatcaaactccacataatcact---aatctttaggttccaatctttggaaagaagataccaagtg |
4226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 63 - 186
Target Start/End: Complemental strand, 24107131 - 24107008
Alignment:
| Q |
63 |
tgtttttaacacttataatgaacttgagagtgatgtactgaatgcgctccactctatgttcccatcattatacaatatcggaccattaccttcattatta |
162 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||| ||||| ||||| | ||||||||||| | ||||| | ||| ||||| ||||||||||||||| |
|
|
| T |
24107131 |
tgtttttaacgcttatgatgaacttgagagtgatgtaatgaatacgctctattctatgttcccttttttatatactattggacctttaccttcattatta |
24107032 |
T |
|
| Q |
163 |
agtccaactccacataatcacttg |
186 |
Q |
| |
|
| || || || ||||||||||||| |
|
|
| T |
24107031 |
aatcaaattcaacataatcacttg |
24107008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 24103738 - 24103597
Alignment:
| Q |
80 |
atgaacttgagagtgatgtactgaatgcgctccactctatgttcccatcattatacaatatcggaccattaccttcattattaagtccaactccacataa |
179 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| ||||||||||||| || |||||| || || ||||| |||| || |||| || || |||||| || |
|
|
| T |
24103738 |
atgaacttgagagtgatgttatgaatgctctctactctatgttcccttctatatacaccattggcccatttgcttcttttttaaatcaaagtccacaaaa |
24103639 |
T |
|
| Q |
180 |
tcacttggaatctttaggttccaatctttggaaagaagatac |
221 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
24103638 |
tcacttggcatctttaaattccaatctttggaaagaagatac |
24103597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 20863170 - 20863374
Alignment:
| Q |
14 |
tagaatttttcattgaagcagcagatcaatttcacagagcttctgcaactgtttttaacacttataatgaacttgagagtgatgtactgaatgcgctcca |
113 |
Q |
| |
|
|||||||| ||||||||| || |||| |||||||||||| ||||| | |||||| || |||| ||||| |||||||||||||| |||||| ||| | |
|
|
| T |
20863170 |
tagaatttctcattgaagtagtagatagatttcacagagcctctgctattgttttcaatactttcaatgagcttgagagtgatgttatgaatgttctcta |
20863269 |
T |
|
| Q |
114 |
ctctatgttcccatcattatacaatatcggaccattaccttcattattaagtccaactccacataatcacttggaatctttaggttccaatctttggaaa |
213 |
Q |
| |
|
||||||||||| || |||||| || || || || ||| || |||| || || |||||| |||||||||| ||||||| ||| | |||||||||| |
|
|
| T |
20863270 |
ttctatgttcccttctctatacaccattggcccttttgtttcttttttaaatcaaagtccacagaatcacttggcgtctttagattcaagtctttggaaa |
20863369 |
T |
|
| Q |
214 |
gaaga |
218 |
Q |
| |
|
||||| |
|
|
| T |
20863370 |
gaaga |
20863374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 1674900 - 1674824
Alignment:
| Q |
148 |
ttaccttcattattaagtccaactccacata---atcacttggaatctttaggttccaatctttggaaagaagatac |
221 |
Q |
| |
|
|||||||||||||||| | ||||||||| | |||| || ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1674900 |
ttaccttcattattaaaccaaactccacaaattcatcaattagaatctttaggttccaacctttggaaagaagatac |
1674824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 137 - 61
Alignment:
| Q |
148 |
ttaccttcattattaagtccaactccacata---atcacttggaatctttaggttccaatctttggaaagaagatac |
221 |
Q |
| |
|
|||||||||||||||| | ||||||||| | |||| || ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
137 |
ttaccttcattattaaaccaaactccacaaattcatcaattagaatctttaggttccaacctttggaaagaagatac |
61 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 1281788 - 1281713
Alignment:
| Q |
148 |
ttaccttcattattaagtccaactccacata---atcacttggaatctttaggttccaatctttggaaagaagata |
220 |
Q |
| |
|
|||||||||||||||| | ||||||||| | |||| ||||| ||||||| |||||| |||||||||||||||| |
|
|
| T |
1281788 |
ttaccttcattattaaaccaaactccacaaattcatcaattggattctttagattccaacctttggaaagaagata |
1281713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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