View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11584_low_39 (Length: 205)
Name: NF11584_low_39
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11584_low_39 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 19213696 - 19213870
Alignment:
| Q |
15 |
agagaatactttgtactcacatcatgcaataatggaagcatcagtggttgcaaggccagatgagaaatggggtgagtctccatgtgcatttgtgacatta |
114 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19213696 |
agagagtactttgtactcacatcatgcaatattggaagcatcagtggttgcaaggccagatgagaaatggggtgagtctccatgtgcatttgtgacatta |
19213795 |
T |
|
| Q |
115 |
aagccaagagtagatagtagtaatgaaaagtgtttagttgaggatatattgagtttttgtaaggctaaggtgtct |
189 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19213796 |
aagccaagagtggatagtagtaatgaaaagtgtttagttgaggatatattgagtttttgtaaggctaagatgtct |
19213870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 50255834 - 50255712
Alignment:
| Q |
15 |
agagaatactttgtactcacatcatgcaataatggaagcatcagtggttgcaaggccagatgagaaatggggtgagtctccatgtgcatttgtgacatta |
114 |
Q |
| |
|
||||||| || ||||||| |||| ||| ||| | || |||||||||| || || ||||| ||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
50255834 |
agagaatgctctgtactcgcatcctgctatacttgagacatcagtggtcgctagaccagacgagaaatggggcgagtctccgtgtgcgtttgtgacatta |
50255735 |
T |
|
| Q |
115 |
aagccaagagtagatagtagtaa |
137 |
Q |
| |
|
|||||| |||| ||||| ||||| |
|
|
| T |
50255734 |
aagccaggagtggataggagtaa |
50255712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University