View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11584_low_6 (Length: 617)
Name: NF11584_low_6
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11584_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 12772628 - 12772977
Alignment:
| Q |
19 |
atcatatcggatctttagaatatgtgattgcatgcgtaatttgttgattgtagaaannnnnnnaaaccttaaatgaatgt--tttatgtggtgtcttaaa |
116 |
Q |
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| T |
12772628 |
atcatatcggatctttagaatatgtgattgcatgggtaatttgttgattgtagaaattgttttaaaccttaaatggatgtgttttatgtggtgtcttaaa |
12772727 |
T |
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| Q |
117 |
ccaaaatgacatcaaattagacagcaatcttaattactaatcaaggaaatttgactattttataattgtggtcaaggaaatttgaattttgtccttgaag |
216 |
Q |
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| T |
12772728 |
ccaaaatgacatcaaattagacagcaatcttaattactaatcaaggaaatttgactattttataattgtggtcaaggaaatttgaattttgtccttgaag |
12772827 |
T |
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| Q |
217 |
cttaaagtccaaa-ccttaccccggtgtttaatttgttaaacataattcagtgaaaaatatgttacaaaaacaattagcctctcctctatttcaagaagt |
315 |
Q |
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| T |
12772828 |
cttaaagtccaaacccttaccacggtgtttaatttgttaaacataattcagtgaaaaatatgttacaaaaacaattagcctctcctctatttcaagaagt |
12772927 |
T |
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| Q |
316 |
tagtctatgnnnnnnntagaagataaatatgaaaaataaattgagtgttg |
365 |
Q |
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| T |
12772928 |
tagtctatgaaaaaaatataagataaatatgaaaaataaattgagtgttg |
12772977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 332 - 440
Target Start/End: Original strand, 12773001 - 12773115
Alignment:
| Q |
332 |
tagaagataaatatgaaaaataaattgagtgttg-------cctctttaaatgtcaagagtaatacatggtacatatcagaataccatagtataaattca |
424 |
Q |
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| T |
12773001 |
tagaagataaatatgaaaattaaattgagtgttgggggttgcctccttaaatgtcaagagtgatacatggtacatatcagaataccatagtat-aattca |
12773099 |
T |
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| Q |
425 |
aactagcctttatcaa |
440 |
Q |
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| T |
12773100 |
aactagcctttatcaa |
12773115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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