View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11584_low_7 (Length: 572)
Name: NF11584_low_7
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11584_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 16 - 569
Target Start/End: Original strand, 32484171 - 32484724
Alignment:
| Q |
16 |
gaacctaattgccgactctgataccactgttgttgcctcttcgggcgcacttgttgatccttcttcgttgtattcggctccgattaatgccttcatgacg |
115 |
Q |
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| T |
32484171 |
gaacctaattgccgactctgataccactgttgttgcctcttcgggcgcacttgttgatccttcttcgttgtattcggctccgattaatgccttcatgacg |
32484270 |
T |
|
| Q |
116 |
gctagtggtacgcaattcttccctcgcccaagatcttgaaaacaaaattgagaggaaagaggagttattatggggatcatggcgtatatattatcccaca |
215 |
Q |
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| T |
32484271 |
gctagtggtacgcaattcttccctcgcccaagatcttgaaaacaaaattgagaagaaagaggagttattatggggatcatggcgtatatattatcccaca |
32484370 |
T |
|
| Q |
216 |
tatatacttctcttttaccaaaatttgtgtttcaatcatttgaccatgacattgttgttgtggccaagtagtagaggtaaatttgacacacatattgaag |
315 |
Q |
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| T |
32484371 |
tatatacttctcttttaccaaaatttgtgtttcaatcatttgaccatgacattgttgttgtggccaagtagtagaggtaaatttgacacacatattgaag |
32484470 |
T |
|
| Q |
316 |
tagtagaacaaaatgagattattatatcaaggatgtttgatttttgtgcaaaattatcaatgctttgtccaaaaatactatatttattcttcttctcctt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32484471 |
tagtagaacaaaatgagattattatatcaaggatgtttgatttttgtgcaaaattatcaatgctttgtccaaaaatactatatttattcttcttctcctt |
32484570 |
T |
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| Q |
416 |
gaaaaactagctagccaaagctattgtttctttctatgtgtactctataatggacttctatggctctattatttaatgtagcttaatataattagtgtag |
515 |
Q |
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| T |
32484571 |
gaaaaactagctagccaaagctattgtttctttctatgtgtactctataatggacttctatggctctattattaaatgtagcttaatataattagtgtag |
32484670 |
T |
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| Q |
516 |
tgtgtgtcttctttttattcattgatgcattattttatggggattttagttctt |
569 |
Q |
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| T |
32484671 |
tgtgtgtcttctttttattcattgatgcattattttatggggattttagttctt |
32484724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 8103003 - 8103092
Alignment:
| Q |
66 |
ttgttgatccttcttcgttgtattcggctccgattaatgccttcatgacggctagtggtacgcaattcttccctcgcccaagatcttgaa |
155 |
Q |
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|||||||||||||||| |||||| | ||||| ||||| |||||||| | |||||||||||||||||||||| | |||||||||||||| |
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| T |
8103003 |
ttgttgatccttcttctttgtatccagctccacttaataccttcatgccttctagtggtacgcaattcttcccccacccaagatcttgaa |
8103092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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