View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11584_low_9 (Length: 513)
Name: NF11584_low_9
Description: NF11584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11584_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 31241548 - 31241222
Alignment:
| Q |
17 |
aatatgtaaatttatcaaagctaatatcaatggacaagaattttccagcagagagtacttgagccaaatgaataaggtacaatatattaaccatctacta |
116 |
Q |
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| T |
31241548 |
aatatgtaaatttatcaaagctaatatcaatggacaagaattttccagcagagagtacttgagccaaatgaataaggtacaatatattaaccatctacta |
31241449 |
T |
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| Q |
117 |
cttaagattcacatttgtagtattactttgtagattattatatatatgctagatgttggtcctctaattcattttaattggtgccataccatttcaaaat |
216 |
Q |
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| T |
31241448 |
ctaaagattcacatttgtagtattactatgtagattattatatatatgctagatgttggtcctctaattcattttaattggtgccataccatttcaaaat |
31241349 |
T |
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| Q |
217 |
tggcagagctatatagacaaattggtgggagaagcatacacaaaatggcatgagttggaggaaattgatggggttttaaatgataacattgctttgttaa |
316 |
Q |
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| T |
31241348 |
tggcagagctatatagacaaattggtgggagaagcatacacaaaatggcatgagttggaggaaattgatggggttttaaatgataacattgctttgttaa |
31241249 |
T |
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| Q |
317 |
cccaaggtattttcaattaatcatcaa |
343 |
Q |
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| T |
31241248 |
cccaaggtattttcaattaatcatcaa |
31241222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 361
Target Start/End: Complemental strand, 31232578 - 31232234
Alignment:
| Q |
17 |
aatatgtaaatttatcaaagctaatatcaatggacaagaattttccagcagagagtacttgagccaaatgaataaggtacaatatattaaccatctacta |
116 |
Q |
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| T |
31232578 |
aatatgaaaattaataaaagctaatatcaatggacaagaattttccagcagagagtacttgaaccaaatgaataaggtacaatat--taaccatctacta |
31232481 |
T |
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| Q |
117 |
cttaagattcacatttgtagtattactttg--tagattattata-tatatgctagatgttggtcctctaattcattttaattggtgccataccatttcaa |
213 |
Q |
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| T |
31232480 |
ctcaagactcacatttgtagtattactttaatttgttgattacactatatgctagatattagtcttctaattcattttaattggtgttataccatttcta |
31232381 |
T |
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| Q |
214 |
aattggcagagctatatagacaaattggtgggagaagcatacacaaaatggcatgagttggaggaaattgatggggttttaaatgataacattgctttgt |
313 |
Q |
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| T |
31232380 |
atttgt-agagctatatagacaaattggttggagaagcatacacaaaatggcatgagttggaggaaattgatggggttttaaatgataacattgctttgt |
31232282 |
T |
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| Q |
314 |
taacccaaggtattttcaattaatcatcaatgacttttgttctcaata |
361 |
Q |
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| T |
31232281 |
taacccaaggtattttcaattaaccatcaatgacttctgttctcaata |
31232234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 343
Target Start/End: Complemental strand, 31208936 - 31208868
Alignment:
| Q |
271 |
ttggaggaaattgatggggttttaaatgataacattgctttgttaacccaaggtattttcaattaatcatcaa |
343 |
Q |
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| T |
31208936 |
ttggacgaagttgatgggattttaaatgataacattgcttt----ccataaggtattttcaattaatcatcaa |
31208868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 491
Target Start/End: Complemental strand, 31232185 - 31232112
Alignment:
| Q |
417 |
atagaaataagttcatatactcatgttgattggcttcgtagcaccacacaagatatgttgtactggataacaatc |
491 |
Q |
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| T |
31232185 |
atagaaataagatcatatactcatactggttg-ctacgtagcaccatacaagacctgttgtagtggataacaatc |
31232112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 339
Target Start/End: Original strand, 44029976 - 44030054
Alignment:
| Q |
261 |
atggcatgagttggaggaaattgatggggttttaaatgataacattgctttgttaacccaaggtattttcaattaatca |
339 |
Q |
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|||| ||||||||||||||||||||| ||||| ||||| ||| ||||||||||||| |||||||| ||||| |||||| |
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| T |
44029976 |
atggaatgagttggaggaaattgatgaagttttgaatgacaacgttgctttgttaactcaaggtatgttcaaataatca |
44030054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 261 - 339
Target Start/End: Complemental strand, 44016603 - 44016525
Alignment:
| Q |
261 |
atggcatgagttggaggaaattgatggggttttaaatgataacattgctttgttaacccaaggtattttcaattaatca |
339 |
Q |
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| T |
44016603 |
atggaatgagttggaggaaattgatgaagttttgaatgacaacgttgctttgttaactcaaggtatattctaataatca |
44016525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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