View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11585_high_15 (Length: 383)
Name: NF11585_high_15
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11585_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 1033811 - 1033444
Alignment:
| Q |
19 |
ctagcatcatatttcgttaccatgttaaggttgttgagaatcaccctattgttcctaagctatctttgacactttacatgaagcatggtttaaaagttaa |
118 |
Q |
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| T |
1033811 |
ctagcatcatatttggttaccatgttaaggttgttgagaatcaccctattgttcctaagctatctttgacactttacatgaagcatggattaaaagttaa |
1033712 |
T |
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| Q |
119 |
ccttcataggcgttgtgatgaagaaattcataaatatttgaaggtaagttagatgtgaattgagaataaatattgctatgattatggatgatgaatatgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1033711 |
ccttcataggcgttgtgatgaagaaattcataaatatttgaaggtaagttagatgtgaattgagaataaatattgctatgattatggatgatgaatatgt |
1033612 |
T |
|
| Q |
219 |
ag-----tttgttttaaaatgaattaagccaatgatgttcaaaactcattatttgag---------atgctaaagagataatggagttttgtttcattga |
304 |
Q |
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| T |
1033611 |
agtttaatttgttttaaaatgaattaagccaatgatgttcaaaactcattatttgagatgtaaagaatggtaaagagataatggagttttgtttcattga |
1033512 |
T |
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| Q |
305 |
gtggtactaatatataatctttcataatggcattgcatatagtttcttttaggtaaattgtggttcat |
372 |
Q |
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| T |
1033511 |
gtggtactaatatatgatctttcataatggtattgcatatagtttcttttaggtaaattgtggttcat |
1033444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 3e-95; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 13895815 - 13895599
Alignment:
| Q |
23 |
catcatatttcgttaccatgttaaggttgttgagaatcaccctattgttcctaagctatctttgacactttacatgaagcatggtttaaaagttaacctt |
122 |
Q |
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| T |
13895815 |
catcatatttcgctaccatattaaggttgttgaaaatcaccttgttgttcctaagcttgctttgacactttacatgaagcatggattaaaagttaacctt |
13895716 |
T |
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| Q |
123 |
cataggcgttgtgatgaagaaattcataaatatttgaaggtaagttagatgtgaattgagaataaatattgctatgattatggatgatgaatatgtagtt |
222 |
Q |
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| T |
13895715 |
cataggcgttgtgatgaagaaattcataaatatttgaaggtaagttagatgtgaattgagaatgaatgttgctatgattatggatgatgaatatgtagtt |
13895616 |
T |
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| Q |
223 |
tgttttaaaatgaatta |
239 |
Q |
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| T |
13895615 |
tgttttaaaatgaatta |
13895599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 13888885 - 13889104
Alignment:
| Q |
19 |
ctagcatcatatttcgttaccatgttaaggttgttgagaatcaccctattgttcctaagctatctttgacactttacatgaagcatggtttaaaagttaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
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| T |
13888885 |
ctagcatcatatttcgttaccatgttaaggttgttgagaatcaccttattgttcctaagctttctttgacactttacatgaaacatggattaaaagttaa |
13888984 |
T |
|
| Q |
119 |
ccttcataggcgttgtgatgaagaaattcataaatatttgaaggtaagttagatgtgaattgagaataaatattgctatgattatggatgatgaatatgt |
218 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| | ||||||| ||||||||| | ||||| ||| | |||||| |||||||| |||| | |
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| T |
13888985 |
tcttcataggcgttgtgatgaagaaattcataaatacttgaagattagttagaagtgaattgatattaaatgttggtgtgattaaggatgatg-atatat |
13889083 |
T |
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| Q |
219 |
agtttgttttaaaatgaatta |
239 |
Q |
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| T |
13889084 |
agtttgtttaaaaattaatta |
13889104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 13890650 - 13890452
Alignment:
| Q |
18 |
actagcatcatatttcgttaccatgttaaggttgttgagaatcaccctattgttcctaagctatctttgacactttacatgaagcatggtttaaaagtta |
117 |
Q |
| |
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||||||||| ||||| | || ||||||||||||||||| ||||||| | ||||||||||||| |||||||| ||||||| ||| |||| |||||||||| |
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| T |
13890650 |
actagcatcctatttggctatcatgttaaggttgttgaaaatcaccttgttgttcctaagcttactttgacattttacataaagtatggattaaaagtta |
13890551 |
T |
|
| Q |
118 |
accttcataggcgttgtgatgaagaaattcataaatatttgaaggtaagttagatgtgaattgagaataaatattgctatgattatggatgatgaatat |
216 |
Q |
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| T |
13890550 |
accttcataggcgttgtgatgaagaaactcataaatatttgaagttaagttagatgttaattgagaataaatattgtgatgattatggatgatgaatat |
13890452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 13891798 - 13891977
Alignment:
| Q |
23 |
catcatatttcgttaccatgttaaggttgttgagaatcaccctattgttcctaagctatctttgacactttacatgaagcatggtttaaaagttaacctt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| ||||| || |||||||| ||| |
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| T |
13891798 |
catcatatttcgttaccatgttaaggttgttgagaagcaccctgttgttcctaagctttctttgacactttacatgaaacatggattgaaagttaatctt |
13891897 |
T |
|
| Q |
123 |
cataggcgttgtgatgaagaaattcataaatatttgaaggtaagttagatgtgaattgagaataaatattgctatgatta |
202 |
Q |
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||| | |||||||||||| ||||||||||||| || || | ||||||| ||||||||| ||||||||||| |||||||| |
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| T |
13891898 |
catcgacgttgtgatgaaaaaattcataaatacttaaacattagttagaagtgaattgataataaatattggtatgatta |
13891977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 13893364 - 13893450
Alignment:
| Q |
18 |
actagcatcatatttcgttaccatgttaaggttgttgagaatcaccctattgttcctaagctatctttgacactttacatgaagcat |
104 |
Q |
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| T |
13893364 |
actagcatcatatttcgttaccgtgttaagattgttgagaatcaccctgttggttctaagctttctttgacactttacatgaagcat |
13893450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 57 - 227
Target Start/End: Original strand, 13893470 - 13893638
Alignment:
| Q |
57 |
aatcaccctattgttcctaagctatctttgacactttacatgaagcatggtttaaaagttaaccttcataggcgttgtgatgaagaaattcataaatatt |
156 |
Q |
| |
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||||||||| ||| | |||| || ||||||||||||| | |||||||| | || ||||||||||||||||| ||||||| |||||||||||| ||| || |
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| T |
13893470 |
aatcaccctgttggttctaaactttctttgacacttttcgtgaagcatagattgaaagttaaccttcatagatgttgtgaagaagaaattcatgaatgtt |
13893569 |
T |
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| Q |
157 |
tgaaggtaagttagatgtgaattgagaataaatattgctatgattatggatgatgaatatgtagtttgttt |
227 |
Q |
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| T |
13893570 |
ttaagtttagttagaagtgaattgataataaatgttgatatgatta-ggatgatg-atatatagtttgttt |
13893638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 300 - 372
Target Start/End: Complemental strand, 13895498 - 13895425
Alignment:
| Q |
300 |
attgagtggtactaatatataatctttcataatggcattgcatatagtttcttttaggt-aaattgtggttcat |
372 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
13895498 |
attgagtggtactaatatatgatctttcataatggtattgcatatagtttcttttaggtaaaattgtggttcat |
13895425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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