View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11585_high_16 (Length: 382)
Name: NF11585_high_16
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11585_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 2923566 - 2923344
Alignment:
| Q |
19 |
acaggctagccggcgtgctctagctactgatgaatggttgagagtcgaagggtgcaagaatgtatatgcgcttggtgattgtgctacgataaatcagcgt |
118 |
Q |
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| T |
2923566 |
acaggctagccggcgtgctctagctactgatgaatggttgagagtcgaagggtgcaacaatgtatatgcgcttggtgattgtgctacgataaatcagcgt |
2923467 |
T |
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| Q |
119 |
aaagtcatggtaaccaccatttccatcatactttttattatcacacttacatttgtgtaatgcacgcgcacatgtgttgacattattattcgttgacgtc |
218 |
Q |
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| T |
2923466 |
aaagtcatggtaaccaccatttccatcatactttttatcatcacacttacatttgtgtaatgcacgcgcacatgtgttgacattattattcgttgacgtc |
2923367 |
T |
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| Q |
219 |
aataatataatgtttcatcatac |
241 |
Q |
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| T |
2923366 |
aataatataatgtttcatcatac |
2923344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 276 - 382
Target Start/End: Complemental strand, 2923309 - 2923203
Alignment:
| Q |
276 |
gttgaaggaatgtataaaactttggtgaagtagaaatacctatcaattccttagctatcaaaaaatacatatttgtttgattaccagttaacctatgaga |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
2923309 |
gttgaaggaatgtataaaactttggtgaagtagaaatatctatcaattccttagctatcaaaaaatacatatttgtttgagtaccaattaacctatgaga |
2923210 |
T |
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| Q |
376 |
tattatc |
382 |
Q |
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||||||| |
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| T |
2923209 |
tattatc |
2923203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 32 - 148
Target Start/End: Complemental strand, 2908445 - 2908329
Alignment:
| Q |
32 |
cgtgctctagctactgatgaatggttgagagtcgaagggtgcaagaatgtatatgcgcttggtgattgtgctacgataaatcagcgtaaagtcatggtaa |
131 |
Q |
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| T |
2908445 |
cgtgctctagcaattgatgaatggttgagagttaaagaatgcaacaatgtgtatgcgtttggtgattgtgctacgataaatcagcgtagagtcatggtaa |
2908346 |
T |
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| Q |
132 |
ccaccatttccatcata |
148 |
Q |
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||| || |||| |||| |
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| T |
2908345 |
acactatctccaccata |
2908329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 36127496 - 36127587
Alignment:
| Q |
39 |
tagctactgatgaatggttgagagtcgaagggtgcaagaatgtatatgcgcttggtgattgtgctacgataaatcagcgtaaagtcatggta |
130 |
Q |
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| T |
36127496 |
tagctactgatgaatggttgagagttgagggaaccgacaatgtgtatgcgcttggtgattgtgctacaataaaccagcgaaaagtcatggta |
36127587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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