View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11585_high_2 (Length: 791)
Name: NF11585_high_2
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11585_high_2 |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 20 - 363
Target Start/End: Complemental strand, 47346765 - 47346420
Alignment:
| Q |
20 |
agaatttcggcgaggctgtttccgacgatgccggttactccgatgattagtcctacgctctggaaggttggcggtgcttcgtcttcatcaaatttcttct |
119 |
Q |
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| T |
47346765 |
agaatttcggcgaggctgtttccgacgatgccggttactccgatgattagtcctacgctctggaaggttggcggtgcttcgtcttcatcaaatttcttct |
47346666 |
T |
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| Q |
120 |
gcagataaatataaaaattgtttattagtaataattaaagggaaatgaagatttgaggatgagagagatggtgtt---accttggcagctccaattgctc |
216 |
Q |
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| T |
47346665 |
gcagataaatataaaa-ttgtttattagtaataattaaagggaaatgaagatttgagaatgagagagatggtgttgttaccttggcagctccaattgctc |
47346567 |
T |
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| Q |
217 |
cggaccaccaccagctcatgtttttgagattcagatatcaatacaaatggacagcgaagaggaaaataatagaccaagagttgagaaacgttacttatgg |
316 |
Q |
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| T |
47346566 |
cggaccaccaccagctcatgtttttgagattcagatatcaatacaaatggacagcgaagaggaaaataatagaccaagagttgagaaacgttacttatgg |
47346467 |
T |
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| Q |
317 |
gatttgttttttaaaacttggagataaactcgtagatttgtctagac |
363 |
Q |
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| T |
47346466 |
gatttgttttttaaaacttggagataaactcgtagatttgtctagac |
47346420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 559 - 778
Target Start/End: Complemental strand, 47345607 - 47345392
Alignment:
| Q |
559 |
ttgatcctcctcttcttgtagtgatgtggcatattcattaatgatagtagaaaaaagatttcatgtatcactcttttggtacacccttttatagcactga |
658 |
Q |
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| T |
47345607 |
ttgatcctcctcttcttttagtgatgtggcacattcattaatgatag---aaagaagatttcatgtattactcttttggtacacccttttatagcactga |
47345511 |
T |
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| Q |
659 |
tgacatgacatggaaatattaaacaatttaactttgtaaagaatgataaaaaagaaaagaatagatctagcaannnnnnnnnaatattttgtctcctatc |
758 |
Q |
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| T |
47345510 |
tgacatgacatggaaatattaaacaatttaactttgtaaagaatgataaaaaagaaaagaatagatctagcaattttttttt-atattttgtctcctatc |
47345412 |
T |
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| Q |
759 |
taataaacacgatctctgct |
778 |
Q |
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| T |
47345411 |
taataaacgcgatctctgct |
47345392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 686 - 778
Target Start/End: Original strand, 3798071 - 3798165
Alignment:
| Q |
686 |
ttaactttgtaaagaatgataaaaaagaaaagaatagatctagcaa--nnnnnnnnnaatattttgtctcctatctaataaacacgatctctgct |
778 |
Q |
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| T |
3798071 |
ttaactttgtaaagaatgataaaaaagaaaagaatagatctagcaaatttttttttttatattttgtctcctatctaataaacgcgatctctgct |
3798165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 608 - 725
Target Start/End: Original strand, 13268 - 13384
Alignment:
| Q |
608 |
gaaaaaagatttcatgtatcactcttttggtacacccttttatagcactgatgacatgacatggaaatattaaacaatttaactttgtaaagaatgataa |
707 |
Q |
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| T |
13268 |
gaaaaaagatt-catgtaccactcttttggtacacccttttctaccaccgatgacatggcatggaaatattaaaaaatttaactatgtaaagaatgataa |
13366 |
T |
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| Q |
708 |
aaaagaaaagaatagatc |
725 |
Q |
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| T |
13367 |
taaagaaaagaatagatc |
13384 |
T |
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