View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11585_high_22 (Length: 325)
Name: NF11585_high_22
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11585_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 126 - 313
Target Start/End: Complemental strand, 14747861 - 14747675
Alignment:
| Q |
126 |
actcgtgaagttagtttgagagttttaagaagatgtagaacattgaacgaaagaaataagatgcataaaattgattgagtacgatttaagaaacaaaaat |
225 |
Q |
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| T |
14747861 |
actcgtgaagttagtttgagagttttaagaagatgtagaacattcaacgaaagaaataagatgcataaaattgattgagtacgatttaagaaacaaaaat |
14747762 |
T |
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| Q |
226 |
gaagatacaaaactaaccatgataagcactatgattggaggttaaacttctaagttttttggtggttaaaattcaagtttgtctcctt |
313 |
Q |
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| T |
14747761 |
gaagatacaaaactaaccatgataagcacaatgattggaggttaaacttct-agttttttgatggttaaaattgaagtttctctcctt |
14747675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 14748359 - 14748266
Alignment:
| Q |
18 |
atcatgacccaattgaatatcgcactattgtcaaagccttacaatacttgacatttacaagaccaattatctcctaggtcgttcaacaaatgtg |
111 |
Q |
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| T |
14748359 |
atcatgacccaattgaatatcgcactattgttaaagccttacaatacttgacatttacaagactaagtatctcctaggtcgttcaacaaatgtg |
14748266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 14740424 - 14740329
Alignment:
| Q |
149 |
tttaagaagatgtagaacattgaacgaaagaaataaga---tgcataaaattgattgagtacgatttaagaaacaaaaatgaagatacaaaactaaccat |
245 |
Q |
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| T |
14740424 |
tttaagaagatatagaacattgaaagaaagaattaagaagatgcataaaattg------tatgattaaagaaacaaaaatcaagatacaaaactaaccat |
14740331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 14748099 - 14748059
Alignment:
| Q |
129 |
cgtgaagttagtttgagagttttaagaagatgtagaacatt |
169 |
Q |
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| T |
14748099 |
cgtgaagttagtttgagggtcttaagaagatgtagaacatt |
14748059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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