View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11585_high_3 (Length: 608)
Name: NF11585_high_3
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11585_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 123 - 590
Target Start/End: Original strand, 26891631 - 26892114
Alignment:
| Q |
123 |
aaacataaaaaagtttatatcatttggtattattggacgtagaaaggttttaatgttaaatatggtgtcatttggtttttgagtatttttaaaattagaa |
222 |
Q |
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| T |
26891631 |
aaacataaaaaagtttatatcatttgttattattggacgtagaaaggttttaatgttaaatatggtgtcatttggtttttgagtatttttaaaattagaa |
26891730 |
T |
|
| Q |
223 |
atccagtgatctacaggctcccattgctcgatgcgcatgaggcaatagttgatcctctagttttcttcattcttagcctcttttctgcttacaaattgtt |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26891731 |
atccagtgatctacaggctcccattgctcgatgcgcatgaggcaatagttgatcctctagttttcttcattcttagcctcttttctgcttacaaattgtt |
26891830 |
T |
|
| Q |
323 |
ctactttaagtctgatagttacattccttcataagacaacaatctgaattagagtcttctgctactaacgtca----------------ccttcagagtc |
406 |
Q |
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| T |
26891831 |
ctactttaagtctgatagttacattccttcataagacgacaaactgaattagagtcttctgctactaacgtcatctttagatcattcatccttcagagtc |
26891930 |
T |
|
| Q |
407 |
ttcattccttcatatgcttctgaatgaaaagtaatcagagcattgactttttagtttacctttcttcaaatcttgccccaagccatacaagtttgtcttt |
506 |
Q |
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| T |
26891931 |
ttcattccttcatatgcttctgaatgtaaagtaatcagagcattgactttttggtttacctctcttcaaatcctgccccaagtcatacaagtttgtcttt |
26892030 |
T |
|
| Q |
507 |
tgctttacatgttttcttatgcattcagaatgttgatgtttttgaactaaaacttgactttgatagtcagaatttaattttacg |
590 |
Q |
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| T |
26892031 |
cgctttacacgttttcttatgcattcagaatgttgatgtttttgaactaaaacttgactttgatagtcagaatttaattttacg |
26892114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 26809595 - 26809654
Alignment:
| Q |
69 |
tgcctagtctctgcctccatcatgatgttgccttcaactcaacctttcttattcaaacat |
128 |
Q |
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| T |
26809595 |
tgcctagtctctgcctccattatgatgctgctctcaactcaacctttcgtattcaaacat |
26809654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 26809733 - 26809775
Alignment:
| Q |
175 |
atgttaaatatggtgtcatttggtttttgagtatttttaaaat |
217 |
Q |
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| T |
26809733 |
atgttaaatatagtgtcatttggtttttgtgtatttttaaaat |
26809775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 26719542 - 26719596
Alignment:
| Q |
62 |
tttttgatgcctagtctctgcctccatcatgatgttgccttcaactcaacctttc |
116 |
Q |
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| T |
26719542 |
tttttgatgcctagtctctgcctcaattatgttgctgccctcaacacaacctttc |
26719596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 528
Target Start/End: Original strand, 27138399 - 27138487
Alignment:
| Q |
440 |
atcagagcattgactttttagtttacctttcttcaaatcttgccccaagccatacaagtttgtcttttgctttacatgttttcttatgc |
528 |
Q |
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| T |
27138399 |
atcagagcattgactttctggttgacctttcttcagatcttgttccaagtcatacgagattttcttttgcttcagatgctttcttatgc |
27138487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 449 - 588
Target Start/End: Original strand, 5345953 - 5346091
Alignment:
| Q |
449 |
ttgactttttagtttacctttcttcaaatcttgccccaagccatacaagtttgtcttttgctttacatgttttcttatgcattcagaatgttgatgtttt |
548 |
Q |
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| T |
5345953 |
ttgactttctagttgatctttcttcaaatcttgttccaagttttataagcttctcttttgcttcagatgatttcatatatgctcagagtctt-atgtttt |
5346051 |
T |
|
| Q |
549 |
tgaactaaaacttgactttgatagtcagaatttaatttta |
588 |
Q |
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| T |
5346052 |
agaactaaatcttgactttgagagtcagaatttaatttta |
5346091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 569
Target Start/End: Original strand, 13896817 - 13896901
Alignment:
| Q |
485 |
caagccatacaagtttgtcttttgctttacatgttttcttatgcattcagaatgttgatgtttttgaactaaaacttgactttga |
569 |
Q |
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| T |
13896817 |
caagtcatacaagattctcatttgcttcaaatgctttcctatgcattcagagtcttgatatttcagaacgaaaacttgactttga |
13896901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 569
Target Start/End: Original strand, 14037434 - 14037518
Alignment:
| Q |
485 |
caagccatacaagtttgtcttttgctttacatgttttcttatgcattcagaatgttgatgtttttgaactaaaacttgactttga |
569 |
Q |
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| T |
14037434 |
caagtcatacaagattctcatttgcttcaaatgctttcctatgcattcagagtcttgatatttcagaacgaaaacttgactttga |
14037518 |
T |
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