View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11585_high_30 (Length: 258)
Name: NF11585_high_30
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11585_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 42208910 - 42209140
Alignment:
| Q |
11 |
aagaagaaaacaaaattggagttgaattcaatctttgaatatgaattttaagggcaatctagaaaaaccacnnnnnnnnnnnnnnncgtaacacctctcg |
110 |
Q |
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| T |
42208910 |
aagaagaaaacaaa-ttggagttgaattcaatctttgaatatgaattttaagggcaatctagaaaaaccacaaaagaaagaaaaaacgtaacacctctcg |
42209008 |
T |
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| Q |
111 |
cttcattagaataaggtaaaaataaagcaataagtgatctatgaccgatgcgtatagaaaaatatatgtcgggaaagagattacttgtcaaacaaatgat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42209009 |
cttcattagaataaggtaaaaataaagcaataagtgatttatgaccgatgcgtatagaaaaatatatgtcgggaaagagattacttgtcaaacaaatgat |
42209108 |
T |
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| Q |
211 |
tcaaaactccttaaggaggtatatgattatat |
242 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
42209109 |
tcaaaactccttaaggaggtatatgattatat |
42209140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 42215926 - 42215979
Alignment:
| Q |
11 |
aagaagaaaacaaaattggagttgaattcaatctttgaatatgaattttaaggg |
64 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42215926 |
aagaagaaaacaaaattggagttgaattcaatctttgaatatgaatttcaaggg |
42215979 |
T |
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