View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11585_high_4 (Length: 496)
Name: NF11585_high_4
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11585_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 12 - 479
Target Start/End: Complemental strand, 47333551 - 47333084
Alignment:
| Q |
12 |
aagaagcaatacgtttgaccatatcaatagaattctgagtttcaggatgataaatctgaaaacaatgttcttcaccttcaacatgaacaagttccacatc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47333551 |
aagaagcaatacgtttgaccatatcaatagaactctgagtttcaggatgataaatctgaaaacaatgttcttcaccttcaacatgaacaagttccacatc |
47333452 |
T |
|
| Q |
112 |
acctttccaaccacttttcttaacagcatcatagtaccaaatccctctgtctcttaaatcatcattcccagcaacaaaaatcaatatcttaggacaacca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47333451 |
acctttccaaccacttttcttaacagcatcatagtaccaaatccctctgtctcttaaatcatcattcccagcaacaaaaatcaatatcttaggacaacca |
47333352 |
T |
|
| Q |
212 |
ataatatccaaacttggagcatcaatagccaaaggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaactttcatag |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47333351 |
ataatatccaaacttggagcatcaatagccaaaggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccatactttcatag |
47333252 |
T |
|
| Q |
312 |
gtgaactttgttcatgcccttcaactgattctgacaaaatcggcttcgaactccaaaacaaaggaaaagcaagtaatgctcctctaattttcacatcacc |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47333251 |
gtgaactttgttcatgcccttcaactgattctgacaaaaccggcttcgaactccaaaacaaaggaaaagcaagtaatgctcctctaattttcacatcacc |
47333152 |
T |
|
| Q |
412 |
aggtaaagtttcaacaccattaccaacacgaagaagtgcattatgtgcaatatttgcacctgaagtat |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47333151 |
aggtaaagtttcaacaccattaccaacacgaagaagtgcattatgtgcaatatttgcacctgaagtat |
47333084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 47301763 - 47301704
Alignment:
| Q |
244 |
aggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaac |
303 |
Q |
| |
|
|||||| |||| ||| |||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
47301763 |
aggattaatcataggattatcaatcccaccgggtgctgaaggatacacaaaattccaaac |
47301704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 303
Target Start/End: Complemental strand, 17842031 - 17841841
Alignment:
| Q |
113 |
cctttccaaccacttttcttaacagcatcatagtaccaaatccctctgtctcttaaatcatcattcccagcaacaaaaatcaat-atcttaggacaacca |
211 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||| ||||||| |||||| || ||||| |||| |||||||||||| ||| |||| ||| || ||||||| |
|
|
| T |
17842031 |
cctttccaaccactcttcttcacaagctcataataccaaacccctctctcccttaatccatctttcccagcaacacaaa-caatcatcctatcacaacca |
17841933 |
T |
|
| Q |
212 |
ataatatccaaacttggagcatcaatagccaaaggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaac |
303 |
Q |
| |
|
| ||||||||| || || | ||| ||| |||||| |||| ||| ||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
17841932 |
agtccatccaaactaggtgcccctatacccacaggattaatcataggattatcaatcccacaaggtgctgaaggatacacaaaattccaaac |
17841841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 311
Target Start/End: Original strand, 653540 - 653632
Alignment:
| Q |
219 |
ccaaacttggagcatcaatagccaaaggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaactttcatag |
311 |
Q |
| |
|
||||||| || ||| ||||||| ||||||| | || |||||||||||||||||| ||||| ||| |||||||| ||||| ||||| |||| |
|
|
| T |
653540 |
ccaaactaggtgcaccaatagcacaaggattaaccatagggttatcaatcccaccctttgcattagggtacacaaagttccacactttaatag |
653632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University