View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11585_high_40 (Length: 228)

Name: NF11585_high_40
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11585_high_40
NF11585_high_40
[»] chr6 (1 HSPs)
chr6 (95-228)||(28717565-28717698)
[»] chr8 (4 HSPs)
chr8 (8-203)||(9197657-9197851)
chr8 (168-204)||(3043262-3043298)
chr8 (174-206)||(9197113-9197145)
chr8 (174-206)||(17725656-17725688)
[»] chr3 (7 HSPs)
chr3 (8-206)||(20213369-20213566)
chr3 (22-206)||(40872164-40872347)
chr3 (176-206)||(13349433-13349463)
chr3 (176-210)||(23706808-23706842)
chr3 (176-210)||(23725264-23725298)
chr3 (176-210)||(23743720-23743754)
chr3 (174-206)||(20212998-20213030)
[»] chr2 (1 HSPs)
chr2 (22-190)||(20431738-20431905)
[»] chr7 (1 HSPs)
chr7 (51-190)||(9749924-9750059)
[»] chr1 (1 HSPs)
chr1 (22-121)||(45818533-45818632)
[»] scaffold0418 (1 HSPs)
scaffold0418 (178-206)||(6891-6919)
[»] chr4 (1 HSPs)
chr4 (178-206)||(40495113-40495141)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 95 - 228
Target Start/End: Complemental strand, 28717698 - 28717565
Alignment:
Q  95 tgggcgaacatacacaataatcacatgggtttgtttaatgaataatttctagctttcagatcaaatgatatggatggtcaggatttggtgtcaacgaatt 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28717698 tgggcgaacatacacaataatcacatgggtttgtttaatgaataatttctggcttttagatcaaatgatatggatggtcaggatttggtgtcaacgaatt 28717599  T
Q  195 tgttgacacctgtgtctaaaagctgatgatctcc 228  Q
     ||||| |||||||||||||||||||||||||||    
T  28717598 cgttgatacctgtgtctaaaagctgatgatctcc 28717565  T

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Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 9197657 - 9197851
Alignment:
Q  8 tgataactaatcaaaaagggtgaaaatcagtgacagagttacgatgagagagacaaattgaaacccaacatgtagaaggagatcacgtgggcgaacatac 107  Q
    |||||| |||||  |||||||||||||||||||  ||| ||| |||||||||||||| |||||||||||||| |||| || |||| |||||| |||| ||    
T  9197657 tgataattaatcggaaagggtgaaaatcagtgatggagctacaatgagagagacaaactgaaacccaacatgaagaaagaaatcatgtgggctaacagac 9197756  T
Q  108 acaataatcacatgggtttgtttaatgaataatttctagctttcagatcaaatgatatggatggtcaggatttggtgtcaacgaatttgttgacac 203  Q
    |||||||||||||| |  ||||||||||||||||||| ||||| |||||||||||||| || ||| ||||||||||||||||||||| ||||||||    
T  9197757 acaataatcacatgag-ctgtttaatgaataatttctggcttttagatcaaatgatatagacggttaggatttggtgtcaacgaattcgttgacac 9197851  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 3043298 - 3043262
Alignment:
Q  168 atggtcaggatttggtgtcaacgaatttgttgacacc 204  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  3043298 atggttaggatttggtgtcaatgaatttgttgacacc 3043262  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 9197145 - 9197113
Alignment:
Q  174 aggatttggtgtcaacgaatttgttgacacctg 206  Q
    ||||||||||||||||||||| |||||||||||    
T  9197145 aggatttggtgtcaacgaattcgttgacacctg 9197113  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 17725656 - 17725688
Alignment:
Q  174 aggatttggtgtcaacgaatttgttgacacctg 206  Q
    ||||||||||||||||||||| |||||||||||    
T  17725656 aggatttggtgtcaacgaattcgttgacacctg 17725688  T

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Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 20213369 - 20213566
Alignment:
Q  8 tgataactaatcaaaaagggtgaaaatcagtgacagagttacgatgagagagacaaattgaaacccaacatgtagaaggagatcacgtgggcgaacatac 107  Q
    |||||| |||||  |||||||||||||||||||  ||| ||| |||||||||||||| |||||||||||||| |||| || |||| |||||| |||| ||    
T  20213369 tgataattaatcggaaagggtgaaaatcagtgatggagctacaatgagagagacaaactgaaacccaacatgaagaaagaaatcatgtgggctaacagac 20213468  T
Q  108 acaataatcacatgggtttgtttaatgaataatttctagctttcagatcaaatgatatggatggtcaggatttggtgtcaacgaatttgttgacacctg 206  Q
    |||||||||||||| |  ||||||||||||||||||| ||||| |||||||||||||| || ||| ||||||||||||||||||||| || ||||||||    
T  20213469 acaataatcacatgag-ctgtttaatgaataatttctggcttttagatcaaatgatatagacggttaggatttggtgtcaacgaattcgtcgacacctg 20213566  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 40872347 - 40872164
Alignment:
Q  22 aaagggtgaaaatcagtgacagagttacgatgagagagacaaattgaaacccaacatgtagaaggagatcacgtgggcgaacatacacaataatcacatg 121  Q
    |||||||||||||||||||   || ||| |||||||||||||| | |||||||||||| |||| || |||| |||||| |||| ||||||||||||||||    
T  40872347 aaagggtgaaaatcagtgatgaagctacaatgagagagacaaactcaaacccaacatgaagaaagaaatcatgtgggctaacagacacaataatcacatg 40872248  T
Q  122 ggtttgtttaatgaataatttctagctttcagatcaaatgatatggatggtcaggatttggtgtcaacgaatttgttgacacctg 206  Q
     |   |||||||||||||||||| ||||| ||||||||||||||  | ||| |||||||  |||||||||||| |||||||||||    
T  40872247 ag-cagtttaatgaataatttctggcttttagatcaaatgatataaacggttaggattttatgtcaacgaattcgttgacacctg 40872164  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 206
Target Start/End: Complemental strand, 13349463 - 13349433
Alignment:
Q  176 gatttggtgtcaacgaatttgttgacacctg 206  Q
    |||||||||||||||||||||||||||||||    
T  13349463 gatttggtgtcaacgaatttgttgacacctg 13349433  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 23706808 - 23706842
Alignment:
Q  176 gatttggtgtcaacgaatttgttgacacctgtgtc 210  Q
    |||||||||||||||||| ||||||||||||||||    
T  23706808 gatttggtgtcaacgaatatgttgacacctgtgtc 23706842  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 23725264 - 23725298
Alignment:
Q  176 gatttggtgtcaacgaatttgttgacacctgtgtc 210  Q
    |||||||||||||||||| ||||||||||||||||    
T  23725264 gatttggtgtcaacgaatatgttgacacctgtgtc 23725298  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 23743720 - 23743754
Alignment:
Q  176 gatttggtgtcaacgaatttgttgacacctgtgtc 210  Q
    |||||||||||||||||| ||||||||||||||||    
T  23743720 gatttggtgtcaacgaatatgttgacacctgtgtc 23743754  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 20213030 - 20212998
Alignment:
Q  174 aggatttggtgtcaacgaatttgttgacacctg 206  Q
    ||||||||||||||||||||| |||||||||||    
T  20213030 aggatttggtgtcaacgaattcgttgacacctg 20212998  T

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Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 190
Target Start/End: Complemental strand, 20431905 - 20431738
Alignment:
Q  22 aaagggtgaaaatcagtgacagagttacgatgagagagacaaattgaaacccaacatgtagaaggagatcacgtgggcgaacatacacaataatcacatg 121  Q
    |||||||||||||||||||  ||| ||| |||||||||||||| | | |||||||||| |||| || |||| |||||| |||| ||||||||||||||||    
T  20431905 aaagggtgaaaatcagtgatggagctacaatgagagagacaaactcatacccaacatgaagaaagaaatcatgtgggctaacagacacaataatcacatg 20431806  T
Q  122 ggtttgtttaatgaataatttctagctttcagatcaaatgatatggatggtcaggatttggtgtcaacg 190  Q
     |  ||||||||||||||||||| ||||| |||||||||||||| || ||| |||||||||||||||||    
T  20431805 ag-ctgtttaatgaataatttctggcttttagatcaaatgatatagacggttaggatttggtgtcaacg 20431738  T

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Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 51 - 190
Target Start/End: Complemental strand, 9750059 - 9749924
Alignment:
Q  51 atgagagagacaaattgaaacccaacatgtagaaggagatcacgtgggcgaacatacacaataatcacatgggtttgtttaatgaataatttctagcttt 150  Q
    |||||||||||||| ||||||||||||||||||||   |||| ||||||||| | ||||||||  |||||| | |  |||||||| ||| |||| |||||    
T  9750059 atgagagagacaaactgaaacccaacatgtagaag---atcatgtgggcgaatagacacaatagccacatgagctc-tttaatgagtaaattctggcttt 9749964  T
Q  151 cagatcaaatgatatggatggtcaggatttggtgtcaacg 190  Q
     ||||||||||||||||| |||||||||||||||||||||    
T  9749963 tagatcaaatgatatggacggtcaggatttggtgtcaacg 9749924  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 45818533 - 45818632
Alignment:
Q  22 aaagggtgaaaatcagtgacagagttacgatgagagagacaaattgaaacccaacatgtagaaggagatcacgtgggcgaacatacacaataatcacatg 121  Q
    |||||||||||||||||||   || ||| |||||||||||||| | |||||||||||| |||| || |||| |||||| |||| ||||||||||||||||    
T  45818533 aaagggtgaaaatcagtgatgaagctacaatgagagagacaaactcaaacccaacatgaagaaagaaatcatgtgggctaacagacacaataatcacatg 45818632  T

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Target: scaffold0418 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 206
Target Start/End: Original strand, 6891 - 6919
Alignment:
Q  178 tttggtgtcaacgaatttgttgacacctg 206  Q
    |||||||||||||||||||||||||||||    
T  6891 tttggtgtcaacgaatttgttgacacctg 6919  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 40495141 - 40495113
Alignment:
Q  178 tttggtgtcaacgaatttgttgacacctg 206  Q
    |||||||||||||||||||||||||||||    
T  40495141 tttggtgtcaacgaatttgttgacacctg 40495113  T

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