View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11585_high_7 (Length: 484)
Name: NF11585_high_7
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11585_high_7 |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 5 - 468
Target Start/End: Complemental strand, 24990776 - 24990318
Alignment:
| Q |
5 |
aggcatggatgaccttttttgtctcaaaattttgttaagattccaaatcctggattcggaacaaccatgactctaatggtggtaattttggtttgtataa |
104 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24990776 |
aggcatggacgaccttttttgtctcagaattttgttaagatttcaaatcttggattcggaacaaccatgactctaatggtggtaattttggtttgtataa |
24990677 |
T |
|
| Q |
105 |
tcgtttgaaaaacaatcggatttaatagacttttgctatgtttgacttcatggtacaa-gacaattcttgcgttcttacgtaagtttaccgtgactttta |
203 |
Q |
| |
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|||||||||||||||| | || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
24990676 |
tcgtttgaaaaacaattgaatctaatagacttttgctatgtttgacttcatggtacaaagacaattcttgcgttcttacgtaagtttactgtgactttta |
24990577 |
T |
|
| Q |
204 |
caaagctacaaatacaagcttctcactaaacatgcagcagcgttctaacaactgctagaccaacacatgttttgtctttcaacaattcattcattgatgt |
303 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
24990576 |
caaagctacaaatacaagcttctcactaaacatgcggcagcgttctaacaactgctagaccaacacatgctttgtctttcaacaattcattaattgatgt |
24990477 |
T |
|
| Q |
304 |
atataaagtgtataatcttcattttcgcactcttttttatctaaacctttacactttcgtgttcgaacaatgttaagtatggagtaatcaaatatcaatg |
403 |
Q |
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|||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24990476 |
atataa-----ataatcttcattttcgcgcacttttttatctaaacctttacactttcgtgttcgaacaatgttaagtatggagtaatcaaatatcaatg |
24990382 |
T |
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| Q |
404 |
ctaaataacannnnnnnggtagatgatgtaaacaaaaaggacaccgaagaattgaaaccaatttc |
468 |
Q |
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| T |
24990381 |
ctaaataaca-ttttttggtagatgatgtaaacaaaaaggacaccaaagaattgaaacaaatttc |
24990318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 5 - 468
Target Start/End: Complemental strand, 24914948 - 24914495
Alignment:
| Q |
5 |
aggcatggatgaccttttttgtctcaaaattttgttaagattccaaatcctggattcggaacaaccatgactctaatggtggtaattttggtttgtataa |
104 |
Q |
| |
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||||||||| |||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24914948 |
aggcatggacgaccttttttgtctcagaattttgttaagatttcaaatcttggattcggaacaaccatgactctaatggtggtaattttggtttgtataa |
24914849 |
T |
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| Q |
105 |
tcgtttgaaaaacaatcggatttaatagacttttgctatgtttgacttcatggtac-aagacaattcttgcgttcttacgtaagtttaccgtgactttta |
203 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24914848 |
tcgtttgaaaaacaattggatctaatagacttttgctatgtttgacttcatggtacaaagacaattcttgcgttcttacgtaagtttaccgtgactttta |
24914749 |
T |
|
| Q |
204 |
caaagctacaaatacaagcttctcactaaacatgcagcagcgttctaacaactgctagaccaacacatgttttgtctttcaacaattcattcattgatgt |
303 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||| |
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| T |
24914748 |
caaagctacaaatacaagcttctcactaaacatgcggcagcgttctaacaactgctagacc------tgctttgtctttcaacaattcattaattgatgt |
24914655 |
T |
|
| Q |
304 |
atataaagtgtataatcttcattttcgcactc-ttttttatctaaacctttacactttcgtgttcgaacaatgttaagtatggagtaatcaaatatcaat |
402 |
Q |
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|||||| ||||||||||||||||| | | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24914654 |
atataa-----ataatcttcattttcgcgcactttttttatctaaacctttacacttttgtgttcgaacaatgttaagtatggagtaatcaaatatcaat |
24914560 |
T |
|
| Q |
403 |
gctaaataacannnnnnnggtagatgatgtaaacaaaaaggacaccgaagaattgaaaccaatttc |
468 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
24914559 |
gctaaataaca-ttttttggtagatgatgtaaacaaaaaggacaccaaagaattgaaacaaatttc |
24914495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 16 - 412
Target Start/End: Complemental strand, 27185 - 26766
Alignment:
| Q |
16 |
accttttttgtctcaaaatttt-gttaagatt--ccaaatcct-ggattcggaacaaccatgactctaat--ggtggtaatttt-ggtttgtataatcgt |
108 |
Q |
| |
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||||||||||||||| |||||| ||||||||| | ||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
27185 |
accttttttgtctcagaatttttgttaagattttcaaaatccttggattcggaacaaccatgactctaaatgggtggtaatttttggtttgtataatcgt |
27086 |
T |
|
| Q |
109 |
ttgaaaaa-caatcggatt-taatagactttt-gctatg-tttgacttcat-ggtacaa-gacaattcttgcgttcttacgtaagtttaccgtgac-ttt |
201 |
Q |
| |
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|||||||| |||| | ||| |||||||||||| |||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| ||| |
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| T |
27085 |
ttgaaaaaacaattgaattctaatagactttttgctatggtttgacttcattggtacaaagacaattcttgcgttcttacgtaagtttactgtgactttt |
26986 |
T |
|
| Q |
202 |
tacaaagctacaaatac-aagcttctca--ctaaacat--gcagcagcgttctaacaactgctagaccaacacatgttttgtctttc-aacaattc-att |
294 |
Q |
| |
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||||||||||||||||| |||||||||| ||||||| | ||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||| |
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| T |
26985 |
tacaaagctacaaatactaagcttctcaacttaaacattgccggcagcgttctaacaactgctagaccaacacatgctttgtctttcaaacaattcaatt |
26886 |
T |
|
| Q |
295 |
cattgatgtatataaagtgtataatcttcatttt---cgcactcttttttatctaaa--cctttacactttcgtgttcgaacaat-gttaagtatggag- |
387 |
Q |
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|||||||||||||| |||||||||||||| |||||| ||||||||||||| | |||||||||||||||||||||||| ||||||||||||| |
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| T |
26885 |
aattgatgtatataa-----ataatcttcatttttcgcgcacttttttttatctaaaaccttttacactttcgtgttcgaacaatagttaagtatggagt |
26791 |
T |
|
| Q |
388 |
taatcaaatatcaatgctaaataac |
412 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
26790 |
taatcaaatatcaatgctaaataac |
26766 |
T |
|
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