View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11585_low_1 (Length: 992)
Name: NF11585_low_1
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11585_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 684329 - 684112
Alignment:
| Q |
8 |
gagcagagacccgatggataattcgcaccaataacatgattaccagaatgttcacaatttcatcacccttaaaaggttcttttatattaaaaagagtaaa |
107 |
Q |
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| T |
684329 |
gagcagagacccgatggataatttgcaccaataacatgattaccagaatgttcacaatttcatcacccttaaaaggttcttttatattaaaaagagtaaa |
684230 |
T |
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| Q |
108 |
ttgcaattcatgtttgtatttatacattatggtaggagatcatagttattaaagaaataaatgagaaaatgtaattcaaaagtaaaagagaatgtgatca |
207 |
Q |
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| T |
684229 |
ttgcaattcatgtttgtatttatacattatggtaggagatcatagttattaaagaaataaatgagaaaatgtaattcaaaagtaaaagagaatgtgatca |
684130 |
T |
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| Q |
208 |
ggaaaggaaataatataa |
225 |
Q |
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| T |
684129 |
ggaaaggaaataatataa |
684112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 605 - 814
Target Start/End: Complemental strand, 684113 - 683904
Alignment:
| Q |
605 |
aaaggaccacacattcacccgttcggaacattgatgatcgtccgatattgatcatttaaactaatgagtttgaatttagtttgtccgatctcgattgaac |
704 |
Q |
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| T |
684113 |
aaaggaccacacattcacccgttccgaacattgatgatcgtccgatattgatcatttaaactaatgagtttgaatttagtttgtctgatctcgattgaac |
684014 |
T |
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| Q |
705 |
gatcactaatgtccctaatgcgtgtaatttgactgcaggggaggtaaatccatagtagaaattctaacctcaaaggtgtcagcaacatcgcctttcccat |
804 |
Q |
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| T |
684013 |
gatcactaatgtcccgaatgcgtgtaatttgactgcaggggaggtaaatccatagtagaaattctaacctcaaaggtgtcagcaacatcgcctttcccat |
683914 |
T |
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| Q |
805 |
cctgattgag |
814 |
Q |
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| T |
683913 |
cctgattgag |
683904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 875 - 975
Target Start/End: Complemental strand, 683843 - 683743
Alignment:
| Q |
875 |
tcagaatcaatatcttattagtatatactaacattaaggcgtaaaatgtggcacttgttaggaatgaaatttttgaaatcaacaacgttcttgatcttat |
974 |
Q |
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| T |
683843 |
tcagaatcaatatcttattagtatatactaacattaaggcgtaaaatgtggcacttgttaggaatgaaatttttgaaatcaacaacgttcttgatcttat |
683744 |
T |
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| Q |
975 |
t |
975 |
Q |
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| T |
683743 |
t |
683743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 104 - 230
Target Start/End: Complemental strand, 646788 - 646662
Alignment:
| Q |
104 |
taaattgcaattcatgtttgtatttatacattatggtaggagatcatagttattaaagaaataaatgagaaaatgtaattcaaaagtaaaagagaatgtg |
203 |
Q |
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| T |
646788 |
taaattgcaattcatgtttgtatttatacacgaagggaggagaccatggttattaaaaaaataaatgagaaagtgaatttcgaaggaaagagagtatgtg |
646689 |
T |
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| Q |
204 |
atcaggaaaggaaataatataacttat |
230 |
Q |
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| || ||||||||| | |||||||||| |
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| T |
646688 |
accaagaaaggaaagagtataacttat |
646662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 903 - 975
Target Start/End: Complemental strand, 646067 - 645995
Alignment:
| Q |
903 |
taacattaaggcgtaaaatgtggcacttgttaggaatgaaatttttgaaatcaacaacgttcttgatcttatt |
975 |
Q |
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|||| |||||||||||||| |||||||| ||||||| ||| ||| |||||||||||| | |||||||||||| |
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| T |
646067 |
taactttaaggcgtaaaatatggcacttcttaggaacgaagtttccgaaatcaacaacatccttgatcttatt |
645995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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