View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11585_low_10 (Length: 459)
Name: NF11585_low_10
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11585_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 216 - 442
Target Start/End: Original strand, 34008036 - 34008262
Alignment:
| Q |
216 |
catattatggtgtgtattgtttttctttttagtaattagaagtggcatttcttcttgtttacacagttgtgtttgatttaattgatggatgaaatgccag |
315 |
Q |
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| T |
34008036 |
catattatggtgtgtattgtttttctttttagtaattagaagtggcatttcttcttgtttacacagttgtgtttgatttaattgatggatgaaatgccag |
34008135 |
T |
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| Q |
316 |
gtttgttgtagaaacggtgtgagttccaataacttatatatgcactcttcttattaattaaatcctttgtttaaattatgcagtttatcacttttcaagc |
415 |
Q |
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| T |
34008136 |
gtatgttgtagagacggtgtgagttccaataacttatatatgtactcttcttattaattaaatcctttgtttaaattatgcagtttatcacttttcaagc |
34008235 |
T |
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| Q |
416 |
tcaagctaactagtagtaactgtgatg |
442 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
34008236 |
tcaaactaactagtagtaactgtgatg |
34008262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 209 - 327
Target Start/End: Complemental strand, 33349718 - 33349601
Alignment:
| Q |
209 |
catgcttcatattatggtgtgtattgtttttctttttagtaattagaagtggcatttcttcttgtttacacagttgtgtttgatttaattgatggatgaa |
308 |
Q |
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||||||||||||| ||||||||||| || |||||| ||||||||| ||| ||||||||| ||| || |||||| |||||| ||||| | ||||||| | |
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| T |
33349718 |
catgcttcatattgtggtgtgtatttttgttctttcgagtaattaggagttgcatttcttggtgtatatacagttctgtttgctttaa-tcatggatgca |
33349620 |
T |
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| Q |
309 |
atgccaggtttgttgtaga |
327 |
Q |
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| T |
33349619 |
attgcaggtatgttgtaga |
33349601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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