View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11585_low_12 (Length: 407)
Name: NF11585_low_12
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11585_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 391
Target Start/End: Complemental strand, 24985121 - 24984741
Alignment:
| Q |
11 |
aagaatttatgaagtcaatatgttgaagtcaaaataaaagtctagacatcttgaagtcaatatgttgaatttagacatcttgaccatttgatgaattcaa |
110 |
Q |
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| T |
24985121 |
aagaatttttgaagtcaatatgttgaagtcaaaataaaagtctagacatcttgaagtcaatatgttgaatttagacatcttgaccatttgatgaattcaa |
24985022 |
T |
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| Q |
111 |
tagttgcttatatgactccatcaaattgaattttaatataaaaatgaacatgatcaaagcttgtattgtaaagttgaattggttaagtcgaaatacgagt |
210 |
Q |
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| T |
24985021 |
tagttgcttatatgactccatcaaattgaattttaatataaaaatgaacatgatcaaagcttgtactgtaaagttgaattggttaagtcgaaatatgagt |
24984922 |
T |
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| Q |
211 |
tatatgattttcatcgaacgattgagatctgcaactttcgtatttttaactgacaaaaggaaatttgttggtataaaaaacttcatacccggaagcttca |
310 |
Q |
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| T |
24984921 |
tatatgattttcatcgaacgattgagatctgtaactttcgtatttttaactgacaaaagaaaatttgttggtataaaaaacttcatacccggaagcttca |
24984822 |
T |
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| Q |
311 |
tggccaaaaatccgaggataagcacgttgaggctcacactttgattgatgaaggtgaaaaaagaagatgaagaagaaaaac |
391 |
Q |
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| T |
24984821 |
tggccaaaaatccgaggataagcacgttgaggctcacactttgattgatgaaggtgaaaaaagaagatgaagaagaaaaac |
24984741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 292 - 358
Target Start/End: Complemental strand, 24993011 - 24992945
Alignment:
| Q |
292 |
ttcatacccggaagcttcatggccaaaaatccgaggataagcacgttgaggctcacactttgattga |
358 |
Q |
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| T |
24993011 |
ttcatacccggaagcttcatggccaaaaatccgaggaaaagcacgttgaggttcagactttgattga |
24992945 |
T |
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