View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11585_low_13 (Length: 404)

Name: NF11585_low_13
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11585_low_13
NF11585_low_13
[»] chr1 (3 HSPs)
chr1 (19-100)||(24619944-24620020)
chr1 (177-331)||(22571268-22571421)
chr1 (206-331)||(11805986-11806111)
[»] scaffold0049 (2 HSPs)
scaffold0049 (50-167)||(40506-40618)
scaffold0049 (222-331)||(40338-40445)
[»] chr7 (2 HSPs)
chr7 (50-167)||(23690240-23690352)
chr7 (222-299)||(23690102-23690179)
[»] chr6 (2 HSPs)
chr6 (66-167)||(2878200-2878297)
chr6 (222-299)||(2878358-2878435)
[»] chr4 (1 HSPs)
chr4 (66-167)||(9346373-9346470)
[»] chr3 (1 HSPs)
chr3 (188-257)||(21322706-21322778)
[»] scaffold0718 (1 HSPs)
scaffold0718 (77-167)||(1209-1295)


Alignment Details
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 24619944 - 24620020
Alignment:
Q  19 ataaccaatgagattttgtgtatgagtgtcgatccatgttcgaatgtttattttgctcgagcttgcattgcttctctacaga 100  Q
    ||||||||||||||||||||||||||||||    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24619944 ataaccaatgagattttgtgtatgagtgtc----catgt-cgaatgtttattttgctcgagcttgcattgcttctctacaga 24620020  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 331
Target Start/End: Complemental strand, 22571421 - 22571268
Alignment:
Q  177 atgttttcaattgctaatccactatgagcctccatgcaatattctttgttttg-gtgatgaatgatgtcacaagttttgaacctaagacattctacctgt 275  Q
    ||||| || |||||||| ||||| ||||  ||||||| || |||||||||||  ||||  ||  ||||||||||||||||||| |  | ||| || ||||    
T  22571421 atgttatccattgctaacccactttgagtttccatgcgattttctttgttttttgtgacaaaccatgtcacaagttttgaacccacaatattttatctgt 22571322  T
Q  276 ttgatttatttggagttagatagactggtaagtttacttgatattggtttgaaact 331  Q
    || ||||||||||||||||||||| |  ||||| ||  ||||||||||||||||||    
T  22571321 ttaatttatttggagttagatagaatcttaagtata--tgatattggtttgaaact 22571268  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 331
Target Start/End: Complemental strand, 11806111 - 11805986
Alignment:
Q  206 ctccatgcaatattctttgttttggtgatgaatgatgtcacaagttttgaacctaagacattctacctgtttgatttatttggagttagatagactggta 305  Q
    ||||||||||||||| ||||||||| ||| ||  ||  || ||||||| ||| ||| |  || || |||||| |||| |||| | |||| |||| |  ||    
T  11806111 ctccatgcaatattcgttgttttggggataaaccataacaaaagttttaaacttaaaatgttataactgtttaatttctttgcatttagttagaataata 11806012  T
Q  306 agtttacttgatattggtttgaaact 331  Q
    ||||||||||||||||||||| ||||    
T  11806011 agtttacttgatattggtttgcaact 11805986  T

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Target: scaffold0049 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 40618 - 40506
Alignment:
Q  50 atccatgttcgaatgtttattttgctcgagcttgcattgcttctctacagactataattggctgtattctcatacacacgatgcacattgtatgatactc 149  Q
    ||||||||| ||||||| ||||| || || |||| |||| |||||||||||||||   |||| ||||| |||||||||||| |||| |||| || |||||    
T  40618 atccatgtttgaatgtt-atttttctggaacttgaattggttctctacagactat---tggccgtattttcatacacacgaggcac-ttgtttggtactc 40524  T
Q  150 taagccttttcaagccac 167  Q
    | ||||||||||||||||    
T  40523 tgagccttttcaagccac 40506  T

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Target: scaffold0049; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 331
Target Start/End: Complemental strand, 40445 - 40338
Alignment:
Q  222 ttgttttggtgatgaatgatgtcacaagttttgaacctaagacattctacctgtttgatttatttggagttagatagactggtaagtttacttgatattg 321  Q
    |||||||||||| |||  ||||||||||||||||||| |    ||| || |||||| |||| |||||||||||||||| |  || |  |||||| |||||    
T  40445 ttgttttggtgacgaaccatgtcacaagttttgaacccactttattatatctgtttaatttctttggagttagatagagtcatagg--tacttggtattg 40348  T
Q  322 gtttgaaact 331  Q
    ||||||||||    
T  40347 gtttgaaact 40338  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 23690352 - 23690240
Alignment:
Q  50 atccatgttcgaatgtttattttgctcgagcttgcattgcttctctacagactataattggctgtattctcatacacacgatgcacattgtatgatactc 149  Q
    ||||||||| ||||||| ||||| || |||||||||||| |||||||||||||||   |||   |||| |||||||||| | |||| |||| || |||||    
T  23690352 atccatgtttgaatgtt-atttttctagagcttgcattggttctctacagactat---tggtcatattttcatacacaccaggcac-ttgtttggtactc 23690258  T
Q  150 taagccttttcaagccac 167  Q
    | ||||||||||||||||    
T  23690257 tgagccttttcaagccac 23690240  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 23690179 - 23690102
Alignment:
Q  222 ttgttttggtgatgaatgatgtcacaagttttgaacctaagacattctacctgtttgatttatttggagttagataga 299  Q
    |||||||||||| |||  ||||||||||||||||||| |  | ||| || |||||| |||| ||||||||||||||||    
T  23690179 ttgttttggtgacgaaccatgtcacaagttttgaacccactatattatatctgtttaatttctttggagttagataga 23690102  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 167
Target Start/End: Original strand, 2878200 - 2878297
Alignment:
Q  66 ttattttgctcgagcttgcattgcttctctacagactataattggctgtattctcatacacacgatgcacattgtatgatactctaagccttttcaagcc 165  Q
    ||||||| || |||||||||||| |||||||||||||   |||||  ||||| |||||||||||| |||  |||| || |||||| ||||||||||||||    
T  2878200 ttatttttctagagcttgcattggttctctacagact---attggtcgtattttcatacacacgaggca-tttgtttggtactctgagccttttcaagcc 2878295  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 2878358 - 2878435
Alignment:
Q  222 ttgttttggtgatgaatgatgtcacaagttttgaacctaagacattctacctgtttgatttatttggagttagataga 299  Q
    ||||||||| || |||  ||||||||||||||||||| |  | ||| || |||||| |||| ||||||||||||||||    
T  2878358 ttgttttggcgacgaaccatgtcacaagttttgaacccactatattatatctgtttaatttctttggagttagataga 2878435  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 167
Target Start/End: Complemental strand, 9346470 - 9346373
Alignment:
Q  66 ttattttgctcgagcttgcattgcttctctacagactataattggctgtattctcatacacacgatgcacattgtatgatactctaagccttttcaagcc 165  Q
    ||||||| |||||| ||||| || |||||||||| ||||   |||  ||||| |||||||||||| |||| |||| || |||||| ||||||||||||||    
T  9346470 ttattttcctcgagtttgcactggttctctacagtctat---tggtcgtattgtcatacacacgaggcac-ttgtttggtactctgagccttttcaagcc 9346375  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 257
Target Start/End: Original strand, 21322706 - 21322778
Alignment:
Q  188 tgctaatccactatgagcctccatgcaatattct---ttgttttggtgatgaatgatgtcacaagttttgaac 257  Q
    |||||||||||| |||||||||||| ||| ||||   ||||||||||||||||  |||||| || ||||||||    
T  21322706 tgctaatccactttgagcctccatgaaattttctttgttgttttggtgatgaaccatgtcataaattttgaac 21322778  T

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Target: scaffold0718 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0718
Description:

Target: scaffold0718; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 1209 - 1295
Alignment:
Q  77 gagcttgcattgcttctctacagactataattggctgtattctcatacacacgatgcacattgtatgatactctaagccttttcaagccac 167  Q
    |||||||||||| |||||||||||||    |||||  |||| || ||||||||| |||| |||| || |||||| ||||||||||||||||    
T  1209 gagcttgcattggttctctacagact---gttggccatattttcgtacacacgaggcac-ttgtttggtactctgagccttttcaagccac 1295  T

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