View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11585_low_17 (Length: 377)
Name: NF11585_low_17
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11585_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 182 - 366
Target Start/End: Complemental strand, 48512253 - 48512069
Alignment:
| Q |
182 |
aatatagaaaaggacttgtcatctttgtttaagaatattgttgtgttgatgagagagacatgcaaacacatattcatagttgannnnnnngtttaccttt |
281 |
Q |
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| T |
48512253 |
aatatagaaaaggacttgtcatctttgtttaagaatattgttgtgttgatgagagagacatgcaaacacatattcatagttgatttttatgtttaccttt |
48512154 |
T |
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| Q |
282 |
gcatgtccagttgaggtggggttgtctcctttggtctttttaggacctttctgccctccaacacctgcctttgtcccaagttctt |
366 |
Q |
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| T |
48512153 |
gcatgtccagttgaggtggggttgtctcctttggtctttttaggacctttctgccctccaacacctgcctttgtcccaagttctt |
48512069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 48512418 - 48512331
Alignment:
| Q |
17 |
aaatatatctaatttaccttgccaaagggtgaaacaagttgttgtaacgctgcaattcgttcacctagcttctcttttttcggctatt |
104 |
Q |
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| T |
48512418 |
aaatatatctaatttaccttgccaaagggtgaaacaagttgttgtaacgctgcaattcgttcacctagcttctcttttttcggctatt |
48512331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 4639204 - 4639279
Alignment:
| Q |
182 |
aatatagaaaaggacttgtcatctttgtttaagaatattgttgtgttgatgagagagacatgcaaacacatattca |
257 |
Q |
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| T |
4639204 |
aatatagaaaaagacttgtcatctttgtttaagaatattgttgtgttgatgagagagacatgcaaatacatattca |
4639279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 4639039 - 4639107
Alignment:
| Q |
25 |
ctaatttaccttgccaaagggtgaaacaagttgttgtaacgctgcaattcgttcacctagcttctctttttt |
96 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| |
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| T |
4639039 |
ctaatttaccttgccaaagggtgaaaca---tgttgtaacgctgcaattcgttcaccaagcttctttttttt |
4639107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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