View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11585_low_18 (Length: 364)

Name: NF11585_low_18
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11585_low_18
NF11585_low_18
[»] chr3 (13 HSPs)
chr3 (1-336)||(6788914-6789249)
chr3 (1-218)||(6558102-6558316)
chr3 (1-147)||(6526859-6527000)
chr3 (1-147)||(6848439-6848581)
chr3 (137-194)||(6549630-6549687)
chr3 (140-190)||(6939130-6939180)
chr3 (11-141)||(6939225-6939359)
chr3 (149-218)||(8466372-8466441)
chr3 (278-334)||(6527369-6527425)
chr3 (278-334)||(6848950-6849006)
chr3 (282-340)||(6558639-6558697)
chr3 (140-193)||(6943498-6943551)
chr3 (222-258)||(6796478-6796514)
[»] scaffold0425 (2 HSPs)
scaffold0425 (1-147)||(11566-11707)
scaffold0425 (278-334)||(12055-12111)
[»] chr1 (2 HSPs)
chr1 (107-143)||(17793259-17793295)
chr1 (296-336)||(7982062-7982102)


Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 6788914 - 6789249
Alignment:
Q  1 aattacttgaatcaaacaattacatagtgaggacgtcatgtagccttttctgcgattttcgttttatttctctttttaattgttaagaaaaagtcgtaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  6788914 aattacttgaatcaaacaattacatagtgaggacgtcatgtagccttttctgcgattttcgttttatttctctttttaattgttaagaagaagtcataaa 6789013  T
Q  101 aaattgaatgacatgccactttgttgttaaagggaattttggtggataggagcttccatggtgtttggatcacagtctacatgcaaaattggtttgaaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6789014 aaattgaatgacatgccactttgttgttaaagggaattttggtggataggagcttccatggtgtttggatcacagtctacatgcaaaattggtttgaaac 6789113  T
Q  201 ttccgattcaaacatgttacatgctatacaatttcgcaggtggctcaatattttcttcatttgaatgtttttatcagtgcagtacttctgattttaattc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6789114 ttccgattcaaacatgttacatgctatacaatttcgcaggtggctcaatattttcttcatttgaatgtttttatcagtgcagtacttctgattttaattc 6789213  T
Q  301 attgctttctctcagtttgtgaatatttttatctat 336  Q
    |||  |||||||||||||||||||||||||||||||    
T  6789214 attaatttctctcagtttgtgaatatttttatctat 6789249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 6558102 - 6558316
Alignment:
Q  1 aattacttgaatcaaacaattacatagtgaggacgtcatgtagcctttt-ctgcgattttcgttttatttctctttttaattgttaagaaaaagtcgtaa 99  Q
    ||||||||| |||||  |||||||| ||||||| ||||||| ||||||| | | ||||||| |||||||| | |||||||||||||||  |      |||    
T  6558102 aattacttgcatcaacaaattacatggtgaggatgtcatgtggccttttaccgtgattttcattttatttatatttttaattgttaagtga------taa 6558195  T
Q  100 aaaattgaatgacatgccactttgttgttaaagggaattt--tggtggataggagcttccatggtgtttggatcacagtctacatgcaaaattggtttga 197  Q
    |||||||||||||||||||| ||||||| ||||||||||   ||||| || ||||||||||||||||||||| |||||||||| ||  |||||||||||     
T  6558196 aaaattgaatgacatgccaccttgttgtcaaagggaattacatggtgaatgggagcttccatggtgtttggaacacagtctacgtgataaattggtttgg 6558295  T
Q  198 aacttccgattcaaacatgtt 218  Q
    |||||| ||| ||||||||||    
T  6558296 aacttcggatccaaacatgtt 6558316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 6526859 - 6527000
Alignment:
Q  1 aattacttgaatcaaacaattacatagtgaggacgtcatgtagcctttt-ctgcgattttcgttttatttctctttttaattgttaagaaaaagtcgtaa 99  Q
    ||||| ||| ||||| ||||||||| ||||||| ||||||| ||||||| | | ||||||| |||||||| | |||||||||||||||  |      |||    
T  6526859 aattaattgcatcaaccaattacatggtgaggatgtcatgtggccttttaccgtgattttcattttatttatatttttaattgttaagtga------taa 6526952  T
Q  100 aaaattgaatgacatgccactttgttgttaaagggaattttggtggat 147  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6526953 aaaattgaatgacatgccactttgttgtttaagggaattttggtggat 6527000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 6848439 - 6848581
Alignment:
Q  1 aattacttgaatcaaacaattacatagtgaggacgtcatgtagcctttt-ctgcgattttcgttttatttctctttttaattgttaagaaaaagtcgtaa 99  Q
    ||||| ||| ||||| ||||||||| ||||||| | ||||| ||||||| | | ||||||| |||||||| | |||||||||||||||  | |     ||    
T  6848439 aattaattgcatcaaccaattacatggtgaggatgccatgtggccttttaccgtgattttcattttatttatatttttaattgttaagtgata-----aa 6848533  T
Q  100 aaaattgaatgacatgccactttgttgttaaagggaattttggtggat 147  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6848534 aaaattgaatgacatgccactttgttgtttaagggaattttggtggat 6848581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 6549630 - 6549687
Alignment:
Q  137 ttttggtggataggagcttccatggtgtttggatcacagtctacatgcaaaattggtt 194  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6549630 ttttggtggatgggagcttccatggtgtttggatcacagtctacatgcaaaattggtt 6549687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 6939180 - 6939130
Alignment:
Q  140 tggtggataggagcttccatggtgtttggatcacagtctacatgcaaaatt 190  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  6939180 tggtgggtgggagcttccatggtgtttggatcacagtctacatgcaaaatt 6939130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 6939359 - 6939225
Alignment:
Q  11 atcaaacaattacatagtgaggacgtcatgtagcctttt-ctgcgattttcgttttatttctctttttaattgttaagaaaaagtcgtaaaaaattgaat 109  Q
    ||||| ||||||||  ||||||| ||||||| ||||||| || |  ||||| |||||||||| ||||||| ||||||||| ||||  | |||||||||||    
T  6939359 atcaatcaattacacggtgaggatgtcatgtggccttttactccagttttcattttatttctttttttaagtgttaagaagaagtgatcaaaaattgaat 6939260  T
Q  110 gaca---tgccactttgttgttaaagggaattttg 141  Q
    ||||   |||||||||||| | ||| |||||||||    
T  6939259 gacatgctgccactttgttttcaaatggaattttg 6939225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 8466441 - 8466372
Alignment:
Q  149 ggagcttccatggtgtttggatcacagtctacatgcaaaattggtttgaaacttccgattcaaacatgtt 218  Q
    ||||||||||||| |||||||||||||||||| |  |||||||||||| ||||||  |||||||| ||||    
T  8466441 ggagcttccatggggtttggatcacagtctacgtaaaaaattggtttggaacttctaattcaaacttgtt 8466372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 6527369 - 6527425
Alignment:
Q  278 tgcagtacttctgattttaattcattgctttctctcagtttgtgaatatttttatct 334  Q
    |||||||||||||||| ||||||||| |||| ||||||||||||||||  |||||||    
T  6527369 tgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatct 6527425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 6848950 - 6849006
Alignment:
Q  278 tgcagtacttctgattttaattcattgctttctctcagtttgtgaatatttttatct 334  Q
    |||||||||||||||| ||||||||| |||| ||||||||||||||||  |||||||    
T  6848950 tgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatct 6849006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 6558639 - 6558697
Alignment:
Q  282 gtacttctgattttaattcattgctttctctcagtttgtgaatatttttatctatctat 340  Q
    |||||||||||| ||||||| | |||| ||||||||||||||||  |||||||||||||    
T  6558639 gtacttctgattgtaattcaatactttttctcagtttgtgaataggtttatctatctat 6558697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 6943551 - 6943498
Alignment:
Q  140 tggtggataggagcttccatggtgtttggatcacagtctacatgcaaaattggt 193  Q
    |||||||  |||||||| ||| ||||||||||||||||||| | ||||||||||    
T  6943551 tggtggacgggagcttcgatgatgtttggatcacagtctacgtacaaaattggt 6943498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 6796478 - 6796514
Alignment:
Q  222 tgctatacaatttcgcaggtggctcaatattttcttc 258  Q
    ||||||||||||||||||||||||  |||||||||||    
T  6796478 tgctatacaatttcgcaggtggcttgatattttcttc 6796514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 11566 - 11707
Alignment:
Q  1 aattacttgaatcaaacaattacatagtgaggacgtcatgtagcctttt-ctgcgattttcgttttatttctctttttaattgttaagaaaaagtcgtaa 99  Q
    ||||| ||| ||||| ||||||||| ||||||| ||||||| ||||||| | | ||||||| |||||||  | |||||||||||||||  |      |||    
T  11566 aattaattgcatcaaccaattacatggtgaggatgtcatgtggccttttaccgtgattttcattttattaatatttttaattgttaagtga------taa 11659  T
Q  100 aaaattgaatgacatgccactttgttgttaaagggaattttggtggat 147  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11660 aaaattgaatgacatgccactttgttgtttaagggaattttggtggat 11707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 12055 - 12111
Alignment:
Q  278 tgcagtacttctgattttaattcattgctttctctcagtttgtgaatatttttatct 334  Q
    |||||||||||||||| ||||||||| |||| ||||||||||||||||  |||||||    
T  12055 tgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatct 12111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 17793295 - 17793259
Alignment:
Q  107 aatgacatgccactttgttgttaaagggaattttggt 143  Q
    |||||||| ||||||||||||||||||||||||||||    
T  17793295 aatgacataccactttgttgttaaagggaattttggt 17793259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 336
Target Start/End: Original strand, 7982062 - 7982102
Alignment:
Q  296 aattcattgctttctctcagtttgtgaatatttttatctat 336  Q
    |||||||| |||| ||||||||||||||||| |||||||||    
T  7982062 aattcattactttttctcagtttgtgaatatgtttatctat 7982102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University